FUNCTIONAL ROLE	GENE ID	SUBSYSTEMS	SUBSYSTEM CLASS	REACTIONS
Chromosomal replication initiator protein DnaA	peg.1	DNA-replication	DNA Metabolism	rxn05294
DNA polymerase III beta subunit (EC 2.7.7.7)	peg.2	DNA-replication	DNA Metabolism	rxn05294
DNA recombination and repair protein RecF	peg.4	"DNA_repair,_bacterial_RecFOR_pathway"	DNA Metabolism	
DNA gyrase subunit B (EC 5.99.1.3)	peg.6	"DNA_topoisomerases,_Type_II,_ATP-dependent|Resistance_to_fluoroquinolones"	DNA Metabolism|Virulence	rxn05294
DNA gyrase subunit A (EC 5.99.1.3)	peg.7	"DNA_topoisomerases,_Type_II,_ATP-dependent|Resistance_to_fluoroquinolones"	DNA Metabolism|Virulence	rxn05294
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	peg.9	Purine_conversions	Nucleosides and Nucleotides	rxn00834
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	peg.10|peg.1839|peg.1966|peg.2323|peg.2353			
"Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)"	peg.11	Pyridoxin_(Vitamin_B6)_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
"Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)"	peg.12	Pyridoxin_(Vitamin_B6)_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Seryl-tRNA synthetase (EC 6.1.1.11)	peg.13	Glycine_and_Serine_Utilization|Selenocysteine_metabolism|tRNA_aminoacylation	Amino Acids and Derivatives|Protein Metabolism	rxn05296
Deoxyadenosine kinase (EC 2.7.1.76)	peg.14|peg.15	Purine_conversions	Nucleosides and Nucleotides	rxn01444|rxn01508
Deoxyguanosine kinase (EC 2.7.1.113)	peg.14|peg.15	PnuC-like_transporters|Purine_conversions	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Nucleosides and Nucleotides"	rxn01444|rxn01508
"Spore cortex-lytic enzyme, N-acetylglucosaminidase SleL (EC 3.2.1.-)"	peg.16			
Nicotinamidase (EC 3.5.1.19)	peg.17|peg.3179	NAD_and_NADP_cofactor_biosynthesis_global|NAD_regulation|Redox-dependent_regulation_of_nucleus_processes	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Stress Response"	rxn00938
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	peg.18	tRNA_modification_Bacteria|tRNA_processing	RNA Metabolism	
DNA polymerase III subunits gamma and Tau (EC 2.7.7.7)	peg.19	DNA-replication	DNA Metabolism	rxn05294
Transcriptional regulatory protein	peg.20|peg.3248			
Recombination protein RecR	peg.21	"DNA-replication|DNA_repair,_bacterial_RecFOR_pathway"	DNA Metabolism	
inhibitor of the pro-sigma-K processing machinery	peg.23			
alternate gene name: yaaM sigma-F transcribed gene	peg.24			
hydrolysis of 5-bromo 4-chloroindolyl phosphate (X-phos)	peg.25|peg.1282			
Tellurite resistance protein	peg.26			
Arginine decarboxylase (EC 4.1.1.19)	peg.27|peg.1465	Arginine_and_Ornithine_Degradation|Polyamine_Metabolism	Amino Acids and Derivatives	rxn00322|rxn00405
Lysine decarboxylase (EC 4.1.1.18)	peg.27	Lysine_degradation	Amino Acids and Derivatives	rxn00322|rxn00405
Thymidylate kinase (EC 2.7.4.9)	peg.28	pyrimidine_conversions	Nucleosides and Nucleotides	rxn01513|rxn01517
"protein from nitrogen regulatory protein P-II (GLNB) family, ortholog YAAQ B. subtilis"	peg.29			
DUF327 domain-containing protein	peg.30			
DNA polymerase III delta prime subunit (EC 2.7.7.7)	peg.31	DNA-replication	DNA Metabolism	rxn05294
Signal peptidase-like protein	peg.32			
Stage 0 sporulation protein YaaT	peg.32			
DNA replication intiation control protein YabA	peg.33			
COG4123: Predicted O-methyltransferase	peg.34	rRNA_modification_Bacteria|tRNA_modification_Bacteria	RNA Metabolism	
COG2827: putative endonuclease containing a URI domain	peg.35			
Tetrapyrrole (Corrin-Porphyrin) methylase family protein UPF0011	peg.36			
Transition state regulatory protein AbrB	peg.37	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	
Methionyl-tRNA synthetase (EC 6.1.1.10)	peg.38	tRNA_aminoacylation	Protein Metabolism	rxn05296
Putative deoxyribonuclease YcfH	peg.39			
Cell wall-binding protein	peg.40|peg.1925|peg.3213			
Ribonuclease M5 (EC 3.1.26.8)	peg.41	Ribosome_biogenesis_bacterial	Protein Metabolism	
Dimethyladenosine transferase (EC 2.1.1.-)	peg.42	Ribosome_biogenesis_bacterial|rRNA_modification_Bacteria	Protein Metabolism|RNA Metabolism	
Veg protein	peg.44			
small acid-soluble spore protein (alpha/beta-type SASP)	peg.45			
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	peg.46	Isoprenoid_Biosynthesis|Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis|polyprenyl_synthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn03908
negative regulation of the purine operon (purEKBCLQFMNHD)	peg.47			
UPF0076 protein yabJ	peg.48			
Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	peg.50	Sialic_Acid_Metabolism	Cell Wall and Capsule	rxn03638|rxn00293
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23)	peg.50	Iojap|Sialic_Acid_Metabolism	Protein Metabolism|Cell Wall and Capsule	rxn03638|rxn00293
Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	peg.51	De_Novo_Purine_Biosynthesis|Pentose_phosphate_pathway|YgfZ	"Nucleosides and Nucleotides|Carbohydrates|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00770
LSU ribosomal protein L25p	peg.52	Ribosome_LSU_bacterial	Protein Metabolism	
Peptidyl-tRNA hydrolase (EC 3.1.1.29)	peg.53	Translation_factors_bacterial	Protein Metabolism	
Transcription-repair coupling factor	peg.55	DNA-replication|Transcription_factors_bacterial	DNA Metabolism|RNA Metabolism	
"Stage V sporulation protein T, AbrB family transcriptional regulator (SpoVT)"	peg.56			
Low temperature requirement B protein	peg.57			
tetrapyrrole methylase family protein/MazG family protein	peg.58			
Heat shock protein 15	peg.59			
Ribosome-associated heat shock protein	peg.59			
YabP protein	peg.60			
Spore cortex biosynthesis protein	peg.61			
Cell division protein DivIC	peg.62	Bacterial_Cell_Division	Cell Division and Cell Cycle	
"RNA binding protein, contains ribosomal protein S1 domain"	peg.63			
Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE)	peg.64			
Probable serine/threonine-protein kinase yabT (EC 2.7.11.1)	peg.66			
tRNA(Ile)-lysidine synthetase	peg.67	tRNA_modification_Bacteria|tRNA_processing	RNA Metabolism	rxn05296
Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	peg.68	Purine_conversions	Nucleosides and Nucleotides	rxn00915|rxn00836|rxn01544
Cell division protein FtsH (EC 3.4.24.-)	peg.69|peg.1243	Bacterial_Cell_Division	Cell Division and Cell Cycle	
"Pantothenate kinase type III, CoaX-like (EC 2.7.1.33)"	peg.70	Coenzyme_A_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn12510
Chaperonin (heat shock protein 33)	peg.71	Streptococcus_pyogenes_recombinatorial_zone	Virulence	
Foldase protein PrsA precursor (EC 5.2.1.8)	peg.72|peg.995	Peptidyl-prolyl_cis-trans_isomerase	Protein Metabolism	
Cysteine synthase (EC 2.5.1.47)	peg.73|peg.3000	Cysteine_Biosynthesis|Methionine_Biosynthesis	Amino Acids and Derivatives	rxn00649|rxn05733
"Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)"	peg.74	"Chorismate:_Intermediate_for_synthesis_of_PAPA_antibiotics,_PABA,_anthranilate,_3-hydroxyanthranilate_and_more.|Folate_Biosynthesis|Tryptophan_synthesis"	"Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01257
"Anthranilate synthase, amidotransferase component (EC 4.1.3.27)"	peg.75	"Chorismate:_Intermediate_for_synthesis_of_PAPA_antibiotics,_PABA,_anthranilate,_3-hydroxyanthranilate_and_more.|Tryptophan_synthesis"	Amino Acids and Derivatives	rxn00727|rxn01257|rxn00726
"Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)"	peg.75	"Chorismate:_Intermediate_for_synthesis_of_PAPA_antibiotics,_PABA,_anthranilate,_3-hydroxyanthranilate_and_more.|Folate_Biosynthesis|Tryptophan_synthesis"	"Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00727|rxn01257|rxn00726
Aminodeoxychorismate lyase (EC 4.1.3.38)	peg.76	"Chorismate:_Intermediate_for_synthesis_of_PAPA_antibiotics,_PABA,_anthranilate,_3-hydroxyanthranilate_and_more.|Folate_Biosynthesis|Tryptophan_synthesis"	"Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn03841
Dihydropteroate synthase (EC 2.5.1.15)	peg.77	Folate_Biosynthesis|YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02201|rxn02200
Dihydroneopterin aldolase (EC 4.1.2.25)	peg.78	Folate_Biosynthesis|Methanopterin_biosynthesis2|Pterin_metabolism_3	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02504
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	peg.79	Folate_Biosynthesis|Methanopterin_biosynthesis2|Pterin_metabolism_3|YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02503
tRNA dihydrouridine synthase B (EC 1.-.-.-)	peg.81	tRNA_modification_Archaea|tRNA_modification_Bacteria	RNA Metabolism	
Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)	peg.82	tRNA_aminoacylation	Protein Metabolism	rxn05296
transcriptional regulator CtsR	peg.83			
"Nucleotide excision repair protein, with UvrB/UvrC motif"	peg.84	"Proteolysis_in_bacteria,_ATP-dependent"	Protein Metabolism	
FIG007067: Putative ATP:guanido phosphotransferase yacI (EC 2.7.3.-)	peg.85			
"ATP-dependent Clp protease, ATP-binding subunit ClpC"	peg.86	"Proteolysis_in_bacteria,_ATP-dependent"	Protein Metabolism	
Negative regulator of genetic competence clcC/mecB	peg.86			
DNA repair protein RadA	peg.87	"DNA_repair,_bacterial"	DNA Metabolism	
DNA integrity scanning protein disA	peg.88			
"Membrane-associated protein containing a homolog of PilT-like ATPase N-terminal domain, YACL B.subtilis ortholog"	peg.89			
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	peg.90	Isoprenoid_Biosynthesis|Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis|Teichoic_and_lipoteichoic_acids_biosynthesis|polyprenyl_synthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Cell Wall and Capsule"	rxn03907
"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)"	peg.91	Isoprenoid_Biosynthesis|Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis|polyprenyl_synthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn03910
Glutamyl-tRNA synthetase (EC 6.1.1.17)	peg.92	Glu-tRNA(Gln)_transamidation|Heme_and_Siroheme_Biosynthesis|tRNA_aminoacylation	"Protein Metabolism|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05296
Glutamyl-tRNA(Gln) synthetase	peg.92	Glu-tRNA(Gln)_transamidation	Protein Metabolism	rxn05296
Serine acetyltransferase (EC 2.3.1.30)	peg.93	Cysteine_Biosynthesis|Methionine_Biosynthesis|Superpathway_of_cysteine_biosynthesis|Vibrio_Polysaccharide_(VPS)_Biosynthesis	Amino Acids and Derivatives|Virulence	rxn00423
Cysteinyl-tRNA synthetase (EC 6.1.1.16)	peg.94	tRNA_aminoacylation	Protein Metabolism	rxn05296
Small protein similar to cysteinyl-tRNA synthetase	peg.95			
TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)	peg.96	rRNA_modification_Bacteria	RNA Metabolism	
RNA polymerase sporulation specific sigma factor SigH	peg.98	"Transcription_initiation,_bacterial_sigma_factors"	RNA Metabolism	
LSU ribosomal protein L33p	peg.99|peg.2494	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
Preprotein translocase subunit SecE (TC 3.A.5.1.1)	peg.100	General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)|HtrA_and_Sec_secretion	Protein Metabolism	
Transcription antitermination protein NusG	peg.101	Transcription_factors_bacterial	RNA Metabolism	
LSU ribosomal protein L11p (L12e)	peg.102	Ribosome_LSU_bacterial	Protein Metabolism	
LSU ribosomal protein L1p (L10Ae)	peg.103	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L10p (P0)	peg.104	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L7/L12 (L23e)	peg.105	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52)	peg.106	rRNA_modification_Bacteria	RNA Metabolism	
DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	peg.107	RNA_polymerase_bacterial	RNA Metabolism	rxn05295
DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)	peg.108	RNA_polymerase_bacterial	RNA Metabolism	rxn05295
Firmicutes ribosomal L7Ae family protein	peg.109	Ribosome_LSU_bacterial	Protein Metabolism	
SSU ribosomal protein S12p (S23e)	peg.110	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
SSU ribosomal protein S7p (S5e)	peg.111	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
Translation elongation factor G	peg.112	"Tetracycline_resistance,_ribosome_protection_type|Translation_elongation_factor_G_family|Translation_factors_bacterial|Universal_GTPases"	Virulence|Protein Metabolism	
Translation elongation factor Tu	peg.113	Translation_factors_bacterial|Universal_GTPases	Protein Metabolism	
SSU ribosomal protein S10p (S20e)	peg.115	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L3p (L3e)	peg.116	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L4p (L1e)	peg.117	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L23p (L23Ae)	peg.118	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L2p (L8e)	peg.119	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
SSU ribosomal protein S19p (S15e)	peg.120	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L22p (L17e)	peg.121	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
SSU ribosomal protein S3p (S3e)	peg.122	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L16p (L10e)	peg.123	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L29p (L35e)	peg.124	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
SSU ribosomal protein S17p (S11e)	peg.125	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L14p (L23e)	peg.126	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L24p (L26e)	peg.127	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L5p (L11e)	peg.128	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
SSU ribosomal protein S14p (S29e)	peg.129|peg.887	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
SSU ribosomal protein S8p (S15Ae)	peg.130	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L6p (L9e)	peg.131	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L18p (L5e)	peg.132	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
SSU ribosomal protein S5p (S2e)	peg.133	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L30p (L7e)	peg.134	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L15p (L27Ae)	peg.135	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
Preprotein translocase secY subunit (TC 3.A.5.1.1)	peg.136	General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)|HtrA_and_Sec_secretion	Protein Metabolism	
Adenylate kinase (EC 2.7.4.3)	peg.137	Purine_conversions	Nucleosides and Nucleotides	rxn00097|rxn01127
Methionine aminopeptidase (EC 3.4.11.18)	peg.138|peg.769	Translation_factors_bacterial	Protein Metabolism	
Translation initiation factor 1	peg.139	Translation_factors_bacterial	Protein Metabolism	
LSU ribosomal protein L36p	peg.140	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
SSU ribosomal protein S13p (S18e)	peg.141	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
SSU ribosomal protein S11p (S14e)	peg.142	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)	peg.143	RNA_polymerase_bacterial	RNA Metabolism	rxn05295
LSU ribosomal protein L17p	peg.144	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
ATPase component of general energizing module of ECF transporters	peg.145|peg.146	Folate_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Transmembrane component of general energizing module of ECF transporters	peg.147	Folate_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
tRNA pseudouridine synthase A (EC 4.2.1.70)	peg.148	tRNA_modification_Archaea|tRNA_modification_Archaea_Henri|tRNA_modification_Bacteria|tRNA_modification_yeast_cytoplasmic|tRNA_modification_yeast_mitochondrial|tRNA_processing	RNA Metabolism	
LSU ribosomal protein L13p (L13Ae)	peg.149	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
SSU ribosomal protein S9p (S16e)	peg.150	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
alternate gene name: ybxH	peg.152			
"Germination-specific N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), cell wall hydrolase CwlD"	peg.153			rxn02875
Iron-sulfur cluster assembly/repair protein ApbC	peg.154			
Spore germination protein GerD	peg.155			
KinB signaling pathway activation protein	peg.156			
"polysaccharide deacetylase, putative"	peg.157|peg.798			
Sulfate permease	peg.158|peg.3472	Cysteine_Biosynthesis|Superpathway_of_cysteine_biosynthesis	Amino Acids and Derivatives	rxn05651
Bile acid sodium symporter	peg.159			
ABC transporter ATP-binding protein ybbA	peg.160			
component of iron-uptake system	peg.161|peg.162|peg.163			rxn05555|rxn05195
"transcriptional regulator, AraC family"	peg.164			
alternate gene name: yzbB	peg.165	Folate_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Beta-hexosaminidase (EC 3.2.1.52)	peg.166	(GlcNAc)2_Catabolic_Operon|Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	rxn00016
beta-lactamase	peg.167			rxn07099
"PTS system, glucose-specific IIBC component (EC 2.7.1.69)"	peg.168|peg.4018	Sucrose_Metabolism	Carbohydrates	rxn05226
"Transcriptional regulator, RpiR family"	peg.169|peg.819			
N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	peg.170			
RNA polymerase sigma factor SigW	peg.173	"Transcription_initiation,_bacterial_sigma_factors"	RNA Metabolism	
"ABC transporter, permease protein YbbP clustered with maltose/maltodextrin transporter"	peg.175|peg.1948	Maltose_and_Maltodextrin_Utilization	Carbohydrates	
Tlr1762 protein	peg.175|peg.1948			
"uncharacterized secreted protein, YBBR Bacillus subtilis homolog"	peg.176			
Phosphoglucosamine mutase (EC 5.4.2.10)	peg.177	Sialic_Acid_Metabolism	Cell Wall and Capsule	rxn00704|rxn01485
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	peg.178|peg.190	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway|Sialic_Acid_Metabolism	Carbohydrates|Cell Wall and Capsule	rxn00555
DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	peg.180|peg.801	DNA_Repair_Base_Excision	DNA Metabolism	
adaptative response to DNA alkylation	peg.181			
positive regulation of the adaAB operon	peg.181			
Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)	peg.182|peg.1356	"DNA_repair,_bacterial"	DNA Metabolism	
"NADH dehydrogenase, subunit 5"	peg.183	Respiratory_Complex_I	Respiration	
Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase chain 5 homolog	peg.184|peg.185	"CO2_uptake,_carboxysome|Respiratory_Complex_I"	Carbohydrates|Respiration	
Chloramphenicol resistance protein	peg.189			
Sporulation killing factor A SkfA	peg.191			
Antimicrobial protein SkfB	peg.192			
Antimicrobial protein SkfC	peg.193			
Amino terminal CAAX family protease SkfD	peg.194			
ABC transporter SkfE	peg.195			
ABC transporter ATP-binding protein SkfF	peg.196			
Protein SkfG	peg.197			
Protein SkfH	peg.198			
YBDE protein	peg.199			
Two-component response regulator ybdJ	peg.201			
sensor histidine kinase	peg.202|peg.377|peg.541|peg.932|peg.1328|peg.3308|peg.3327|peg.3413			
serine/threonine kinase	peg.204			
Amino acid permease	peg.207|peg.432|peg.656|peg.734|peg.946			
sporulation-specific SASP protein	peg.208			
Probable beta-lactamase ybxI precursor (EC 3.5.2.6)	peg.210	Beta-lactamase	Virulence	rxn07099
Cytochrome P450	peg.211			
Amino acid transporter	peg.213|peg.3453			
"Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)"	peg.214	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	rxn01073|rxn08669|rxn00758
Glycerol-3-phosphate transporter	peg.215	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	rxn05578
"transporter, putative"	peg.218			
Permease of the drug/metabolite transporter (DMT) superfamily	peg.222|peg.1880|peg.3406|peg.4087	Cobalt-zinc-cadmium_resistance|Queuosine-Archaeosine_Biosynthesis	Virulence|RNA Metabolism	
"Transcriptional regulator, AraC family"	peg.223|peg.517|peg.2005			
Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)	peg.224	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	rxn04783
extracellular metalloprotease	peg.225			
CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)	peg.228	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids and Lipids	rxn09206|rxn10227|rxn10230|rxn09208|rxn10226|rxn10228|rxn09210|rxn10231|rxn10229
DedA family protein	peg.229|peg.1345|peg.1822			
Phosphatidylserine decarboxylase (EC 4.1.1.65)	peg.230	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids and Lipids	rxn10233|rxn09200|rxn10232|rxn09202|rxn10237|rxn10235|rxn10234|rxn09198|rxn10236
Succinoglycan biosynthesis protein	peg.232			
Right origin-binding protein	peg.233			
Rhodanese domain protein	peg.234			
Proton/aspartate symport protein	peg.235			rxn05217|rxn05297
Proton/glutamate symport protein	peg.235|peg.1022			rxn05217|rxn05298|rxn05297
"PTS system, Glucosamine-specific IIA component (EC 2.7.1.69)"	peg.236			rxn05569
"PTS system, Glucosamine-specific IIB component (EC 2.7.1.69)"	peg.236			rxn05569
"PTS system, Glucosamine-specific IIC component (EC 2.7.1.69)"	peg.236			rxn05569
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	peg.237|peg.3508	Chitin_and_N-acetylglucosamine_utilization|Formaldehyde_assimilation:_Ribulose_monophosphate_pathway|Sialic_Acid_Metabolism	Carbohydrates|Cell Wall and Capsule	rxn00552
Branched-chain amino acid aminotransferase (EC 2.6.1.42)	peg.240|peg.3860	"Alanine_biosynthesis|Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress|Branched-Chain_Amino_Acid_Biosynthesis|Dehydrogenase_complexes|Isoleucine_degradation|Leucine_Biosynthesis|Leucine_Degradation_and_HMG-CoA_Metabolism|Methionine_Salvage|Pyruvate_Alanine_Serine_Interconversions|Valine_degradation"	Amino Acids and Derivatives|Carbohydrates	rxn01575|rxn00806|rxn00903
amino acid permease	peg.241|peg.312			
Homocysteine S-methyltransferase (EC 2.1.1.10)	peg.242	Methionine_Biosynthesis	Amino Acids and Derivatives	rxn00452
Sodium/glutamine symporter glnT	peg.243			rxn05216
Glutaminase (EC 3.5.1.2)	peg.244|peg.1485	"Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"	Amino Acids and Derivatives	rxn00189
"Two-component sensor histidine kinase, controling glutamine utilization"	peg.245			
"Two-component response regulator, controling glutamine utilization"	peg.246			
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)	peg.247	"D-galactarate,_D-glucarate_and_D-glycerate_catabolism"	Carbohydrates	rxn01634
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)	peg.248	"Proline,_4-hydroxyproline_uptake_and_utilization"	Amino Acids and Derivatives	rxn00196
D-glucarate permease	peg.249	"D-galactarate,_D-glucarate_and_D-glycerate_catabolism"	Carbohydrates	rxn05572|rxn05565
Glucarate dehydratase (EC 4.2.1.40)	peg.250	"D-galactarate,_D-glucarate_and_D-glycerate_catabolism"	Carbohydrates	rxn07845|rxn01989
Predicted 5-dehydro-4-deoxyglucarate regulator YcbG	peg.251	"D-galactarate,_D-glucarate_and_D-glycerate_catabolism"	Carbohydrates	
D-galactarate dehydratase (EC 4.2.1.42)	peg.252	"D-galactarate,_D-glucarate_and_D-glycerate_catabolism"	Carbohydrates	rxn03887
macrolide 2'-phosphotransferase	peg.253			
Permeases of the drug/metabolite transporter (DMT) superfamily	peg.255|peg.721			
DNA-binding response regulator	peg.256|peg.376|peg.542|peg.933|peg.2645			
two-component sensor histidine kinase	peg.257|peg.695|peg.758			
Bacitracin transport ATP-binding protein bcrA	peg.258			
Integral membrane protein	peg.260|peg.437|peg.1152|peg.1180|peg.1787|peg.3212			
Spore cortex-lytic enzyme CwlJ	peg.261			
"tellurium resistance protein, putative"	peg.262			
phosphodiesterase/alkaline phosphatase D	peg.263			
Twin-arginine translocation protein TatC	peg.265|peg.599	Twin-arginine_translocation_system	Protein Metabolism	
Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	peg.266			
Cysteine desulfurase (EC 2.8.1.7)	peg.267|peg.2754|peg.2962|peg.3274	Alanine_biosynthesis|Fe-S_cluster_assembly|YgfZ|mnm5U34_biosynthesis_bacteria|tRNA_modification_Archaea|tRNA_modification_Bacteria|tRNA_modification_yeast_cytoplasmic	"Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments|RNA Metabolism"	
lincomycin-resistance	peg.268			
negative regulation of the lincomycin operon (lmrBA)	peg.269			
L-asparaginase (EC 3.5.1.1)	peg.270|peg.2363	"Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"	Amino Acids and Derivatives	rxn00342
lipase	peg.271			
YCZC protein	peg.272			
Autolysin response regulator	peg.275			
catalyses ATP-dependent electrogenic Na+ extrusion without mechanistically coupled H+ or K+ uptake	peg.276|peg.277			rxn05622
"oxidoreductase, aldo/keto reductase family"	peg.278|peg.2367			
L-alanoyl-D-glutamate peptidase	peg.282			rxn08775
response regulator aspartate phosphatase	peg.283|peg.378|peg.501|peg.684|peg.1895|peg.2585|peg.3645|peg.3752|peg.4036			
Glucose 1-dehydrogenase (EC 1.1.1.47)	peg.284|peg.394	"D-gluconate_and_ketogluconates_metabolism|Entner-Doudoroff_Pathway|Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes"	Carbohydrates	rxn01108|rxn01109
"Oligo-1,6-glucosidase (EC 3.2.1.10)"	peg.285	Maltose_and_Maltodextrin_Utilization	Carbohydrates	rxn01259|rxn05746
"Zinc ABC transporter, periplasmic-binding protein ZnuA"	peg.286			rxn05150
"Zinc ABC transporter, ATP-binding protein ZnuC"	peg.287			rxn05150
"Zinc ABC transporter, inner membrane permease protein ZnuB"	peg.288			rxn05150
Tellurium resistance protein TerD	peg.290|peg.291|peg.292			
TerC-like integral membrane protein	peg.293			
FIG013452: putative tellurium resistance protein	peg.294			
Toxic anion resistance protein TelA	peg.295			
Niacin transporter NiaP	peg.296	NAD_and_NADP_cofactor_biosynthesis_global|NAD_regulation	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
"multidrug resistance protein, putative"	peg.297			
transcription regulator	peg.298			
"Glycine betaine ABC transport system, ATP-binding protein OpuAA (EC 3.6.3.32)"	peg.299	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05181|rxn05570|rxn05192|rxn05193|rxn05504|rxn10073|rxn10862|rxn10072
"Glycine betaine ABC transport system, permease protein OpuAB"	peg.300	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05181|rxn05570|rxn05192|rxn05193|rxn05504|rxn10073|rxn10862|rxn10072
"Glycine betaine ABC transport system, glycine betaine-binding protein OpuAC"	peg.301	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05181|rxn05570|rxn05192|rxn05193|rxn05504|rxn10073|rxn10862|rxn10072
amidohydrolase	peg.302			
Transporter	peg.303|peg.407|peg.1399			
alternate gene name: amyA	peg.305			
L-lactate dehydrogenase (EC 1.1.1.27)	peg.306	Fermentations:_Lactate|Fermentations:_Mixed_acid	Carbohydrates	rxn00499
L-lactate permease	peg.307|peg.3425	Lactate_utilization	Carbohydrates	rxn05470|rxn05602
"resistance to puromycin, nerfloxacin, tosufloxacin, but not CCCP"	peg.308			rxn05641
"Transporter, LysE family"	peg.310|peg.1086			rxn05305
"DNA for 25-36 DEGREE region containing the AMYE-SRFA region, complete CDS"	peg.311|peg.367|peg.369|peg.397|peg.398			
NAD synthetase (EC 6.3.1.5)	peg.314	NAD_and_NADP_cofactor_biosynthesis_global|NAD_regulation	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00138
tunicamycin resistance	peg.315			
Shikimate kinase I (EC 2.7.1.71)	peg.316	Chorismate_Synthesis|Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	rxn01739
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE/COQ5 (EC 2.1.1.-)	peg.317|peg.2279	Menaquinone_Biosynthesis_via_Futalosine|Menaquinone_and_Phylloquinone_Biosynthesis|Ubiquinone_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05266
"transcriptional regulator, LysR family"	peg.318|peg.1416|peg.2665|peg.2943|peg.3297|peg.3623|peg.3893|peg.4073			
cephalosporin C deacetylase	peg.319			rxn02196
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase)	peg.321|peg.3290	"Proline,_4-hydroxyproline_uptake_and_utilization|Respiratory_dehydrogenases_1"	Amino Acids and Derivatives|Respiration	rxn00929|rxn09188
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	peg.322|peg.3784	"Arginine_and_Ornithine_Degradation|Proline,_4-hydroxyproline_uptake_and_utilization"	Amino Acids and Derivatives	rxn00503|rxn03071|rxn03424|rxn00183
Proline/sodium symporter PutP (TC 2.A.21.2.1)	peg.323	"Proline,_4-hydroxyproline_uptake_and_utilization"	Amino Acids and Derivatives	rxn05221
Propionate/sodium symporter	peg.323			rxn05221
Regulator of polyketide synthase expression	peg.324|peg.3195			
DUF1980 domain-containing protein	peg.325			
aromatic hydrocarbon catabolism protein	peg.327			
Thioredoxin reductase (EC 1.8.1.9)	peg.328|peg.3217|peg.3485	"Glycine_reductase,_sarcosine_reductase_and_betaine_reductase|Wyeosine-MimG_Biosynthesis|pyrimidine_conversions"	Protein Metabolism|RNA Metabolism|Nucleosides and Nucleotides	rxn05289
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	peg.329|peg.1563	Coenzyme_B12_biosynthesis|Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02287|rxn02264
Uroporphyrinogen-III synthase (EC 4.2.1.75)	peg.329|peg.2817	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02287|rxn02264
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)	peg.330			rxn00569|rxn00568
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)	peg.331|peg.333			rxn00569|rxn00568
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)	peg.332			rxn00569|rxn00568
Nitrate/nitrite transporter	peg.334|peg.3739			rxn05626|rxn05627|rxn05625
GTP cyclohydrolase I (EC 3.5.4.16) type 2	peg.335	Folate_Biosynthesis|Methanopterin_biosynthesis2|Pterin_metabolism|Pterin_metabolism_3|Queuosine-Archaeosine_Biosynthesis|tRNA_modification_Archaea_Henri	"Cofactors, Vitamins, Prosthetic Groups, Pigments|RNA Metabolism"	rxn00299
"cell surface protein, ErfK family"	peg.336			
COG0523: Putative GTPases (G3E family)	peg.337			
"amino acid ABC transporter, permease protein"	peg.338|peg.361|peg.2401|peg.3954			rxn05237|rxn05304
"Amino acid ABC transporter, periplasmic amino acid-binding protein"	peg.339|peg.362			
6-phospho-beta-glucosidase (EC 3.2.1.86)	peg.342|peg.3861|peg.3931|peg.4017	Beta-Glucoside_Metabolism	Carbohydrates	rxn09978|rxn03481|rxn03482|rxn00222|rxn09979|rxn09992|rxn00608|rxn08025
Beta-glucosidase (EC 3.2.1.21)	peg.342|peg.584|peg.3931	Beta-Glucoside_Metabolism|Fructooligosaccharides(FOS)_and_Raffinose_Utilization|Sucrose_Metabolism	Carbohydrates	rxn09978|rxn00222|rxn09979
inhibition of the DNA degrading activity of NucA (competence)	peg.343			
competence	peg.344			
methyl-accepting chemotaxis protein	peg.345|peg.1038|peg.1864|peg.3126|peg.3128|peg.3375			
6-phospho-3-hexuloisomerase	peg.346	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway|Pentose_phosphate_pathway	Carbohydrates	rxn03644
D-arabino-3-hexulose 6-phosphate formaldehyde lyase	peg.347	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway|Pentose_phosphate_pathway	Carbohydrates	rxn03643
"Transcriptional regulator HxlR, formaldehyde assimilation"	peg.348	Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	
surfactin production and competence	peg.349|peg.350|peg.352|peg.353			
assembly link between other regulatory components of the competence signal transduction pathway	peg.351			
regulation of genetic competence	peg.351			
"Transcriptional regulator, GntR family"	peg.357|peg.524|peg.537|peg.570|peg.585|peg.948|peg.1087|peg.1088|peg.3262			
4'-phosphopantetheinyl transferase (EC 2.7.8.-)	peg.358	Fatty_Acid_Biosynthesis_FASII	Fatty Acids and Lipids	
"membrane protein, putative"	peg.359|peg.448|peg.528|peg.569|peg.843|peg.1096|peg.1112|peg.1227|peg.1241|peg.1354|peg.1373|peg.1878|peg.2209|peg.2505|peg.2515|peg.2574|peg.2646|peg.3119|peg.3352|peg.3737|peg.3759|peg.3769|peg.3889|peg.4003|peg.4079|peg.4100			
ATP-binding protein	peg.360|peg.2400			
"Transcriptional regulator, LysR family"	peg.363			
Hydroxyaromatic non-oxidative decarboxylase protein B (EC 4.1.1.-)	peg.364	Hydroxyaromatic_decarboxylase_family	Metabolism of Aromatic Compounds	rxn03393
Hydroxyaromatic non-oxidative decarboxylase protein C (EC 4.1.1.-)	peg.365	Hydroxyaromatic_decarboxylase_family	Metabolism of Aromatic Compounds	
Hydroxyaromatic non-oxidative decarboxylase protein D (EC 4.1.1.-)	peg.366	Hydroxyaromatic_decarboxylase_family	Metabolism of Aromatic Compounds	
Di-/tripeptide transporter	peg.368			
Spore germination protein GerKA	peg.371|peg.779			
Spore germination protein GerKC	peg.372			
Spore germination protein GerKB	peg.373			
"ABC transporter, ATP-binding protein"	peg.374|peg.449|peg.742|peg.831|peg.832|peg.907|peg.908|peg.989|peg.1438|peg.1439|peg.1445|peg.3004|peg.3048|peg.3334|peg.3415|peg.3745|peg.3871|peg.4068			rxn05219|rxn05183
"ABC transporter, permease protein"	peg.375|peg.450|peg.3016|peg.3044			rxn05219|rxn05183
"CSF stimulates competence gene expression (srfA) at low concentrations, inhibits competence gene expression at high concentrations, and stimulates the ability of cells at low cell density to sporulate at high concentrations"	peg.379			
Aspartokinase (EC 2.7.2.4)	peg.380|peg.1679|peg.2850	Lysine_Biosynthesis_DAP_Pathway|Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	rxn00337
Iron compound ABC uptake transporter permease protein	peg.381|peg.382	"Heme,_hemin_uptake_and_utilization_systems_in_GramPositives|Iron_acquisition_in_Streptococcus"	Virulence	rxn05555|rxn05195
Iron compound ABC uptake transporter ATP-binding protein	peg.383	"Heme,_hemin_uptake_and_utilization_systems_in_GramPositives|Hemin_transport_system|Iron_acquisition_in_Streptococcus"	Virulence	rxn05555|rxn05195
Iron compound ABC uptake transporter substrate-binding protein	peg.384	"Heme,_hemin_uptake_and_utilization_systems_in_GramPositives|Iron_acquisition_in_Streptococcus"	Virulence	rxn05555|rxn05195
multidrug resistance protein	peg.385|peg.1098|peg.1685|peg.1686|peg.3116			
"transcriptional regulator, TetR family"	peg.386|peg.1015|peg.2720|peg.3309|peg.3454|peg.4005			
Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-)	peg.387			rxn03976
lin0150	peg.388			
"Transcriptional regulator, ArsR family"	peg.389|peg.1916			
Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain)	peg.390			
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	peg.391	Putrescine_utilization_pathways	Amino Acids and Derivatives	rxn01204
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	peg.392			rxn00509
glucose uptake protein	peg.393			rxn05573
Copper resistance protein D	peg.396			rxn05528
"PTS system, mannitol-specific IIA component (EC 2.7.1.69)"	peg.399	Mannitol_Utilization	Carbohydrates	rxn05617
"PTS system, mannitol-specific IIB component (EC 2.7.1.69)"	peg.399	Mannitol_Utilization	Carbohydrates	rxn05617
"PTS system, mannitol-specific IIC component (EC 2.7.1.69)"	peg.399	Mannitol_Utilization	Carbohydrates	rxn05617
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)	peg.400	Hexitol_degradation|Mannitol_Utilization	Carbohydrates	rxn00546
D-malic enzyme (EC 1.1.1.83)	peg.401	"Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	rxn00160|rxn01285|rxn04143|rxn01847
Tartrate decarboxylase (EC 4.1.1.73)	peg.401	Glycerate_metabolism	Carbohydrates	rxn00160|rxn01285|rxn04143|rxn01847
Tartrate dehydrogenase (EC 1.1.1.93)	peg.401			rxn00160|rxn01285|rxn04143|rxn01847
Signal peptidase I (EC 3.4.21.89)	peg.402|peg.1049|peg.1443|peg.2335	Signal_peptidase	Protein Metabolism	
Hydrolase (HAD superfamily)	peg.405|peg.1129|peg.3960			
Lactam utilization protein LAMB	peg.406			
"Protein c14orf159 homolog, mitochondrial precursor"	peg.408			
Allophanate hydrolase subunit 1 (EC 3.5.1.54)	peg.409			rxn00002
Allophanate hydrolase subunit 2 (EC 3.5.1.54)	peg.409			rxn00002
HTH-type transcriptional regulator kipR (Kip operon repressor protein)	peg.410			
"lipase/acylhydrolase, putative"	peg.411			
Antibiotic biosynthesis monooxygenase	peg.413			
Penicillin-binding protein 3	peg.414			
"Oxidoreductase, aldo/keto reductase family"	peg.415			
"Mannitol operon activator, BglG family"	peg.416	Mannitol_Utilization	Carbohydrates	
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg.417|peg.1027|peg.1036|peg.1720|peg.1829|peg.2859	Biotin_biosynthesis|Unsaturated_Fatty_Acid_Metabolism|n-Phenylalkanoic_acid_degradation	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Fatty Acids and Lipids|Metabolism of Aromatic Compounds"	rxn05252|rxn09449|rxn05247|rxn05248|rxn05249|rxn05251|rxn05736|rxn00947|rxn09448|rxn05250|rxn00988|rxn09450
YDAC protein	peg.418			
"oxidoreductase, short chain dehydrogenase/reductase family"	peg.419|peg.945|peg.1040			
D-lyxose isomerase (EC 5.3.1.15)	peg.420			rxn01386
Ribosomal-protein-L7p-serine acetyltransferase	peg.421	Ribosome_biogenesis_bacterial	Protein Metabolism	
General stress protein 26	peg.422			
"ABC-type sugar transport systems, permease components"	peg.423			
transcriptional regulator (Lrp/AsnC family)	peg.425			
DNA topoisomerase III (EC 5.99.1.2)	peg.426	"DNA_topoisomerases,_Type_I,_ATP-independent"	DNA Metabolism	
GGDEF domain protein	peg.428|peg.912			
"glycosyl transferase, group 2 family protein"	peg.430|peg.2151			
Nudix hydrolase family protein	peg.433			
"Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2)"	peg.434	"Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"	Carbohydrates	rxn00152
Manganese transport protein MntH	peg.436			rxn05618
Protein ecsC	peg.439			
general stress protein	peg.440|peg.2979|peg.2980|peg.3848			
Mn-containing catalase	peg.443|peg.1250			
"TRAP-type C4-dicarboxylate transport system, periplasmic component"	peg.444			rxn05654|rxn05603|rxn05561|rxn05605
Two-component sensor histidine kinase	peg.445|peg.1355|peg.1923			
Transcriptional regulatory protein dcuR	peg.446			
C4-dicarboxylate transport protein	peg.447			rxn05654|rxn05603|rxn05561|rxn05605
"Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)"	peg.452|peg.3287|peg.3724	Acetyl-CoA_fermentation_to_Butyrate|Anaerobic_respiratory_reductases|Butanol_Biosynthesis|Isoleucine_degradation	Carbohydrates|Respiration|Amino Acids and Derivatives	rxn00868|rxn10011|rxn10013|rxn05732|rxn10014|rxn10012|rxn10010
cation efflux family protein	peg.454			
Thioredoxin	peg.455|peg.551|peg.2152|peg.2853|peg.3282	"Glycine_reductase,_sarcosine_reductase_and_betaine_reductase"	Protein Metabolism	
D-alanine--D-alanine ligase (EC 6.3.2.4)	peg.456			rxn00851
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D- alanyl ligase (EC 6.3.2.10)"	peg.457	Methicillin_resistance_in_Staphylococci	Virulence	rxn03164
Cold-shock DEAD-box protein A	peg.458	"ATP-dependent_RNA_helicases,_bacterial"	RNA Metabolism	
putative membrane protein	peg.461|peg.540|peg.823|peg.909|peg.1215|peg.1876|peg.2289|peg.2918|peg.3105|peg.3154|peg.3524			
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	peg.462	Fatty_Acid_Biosynthesis_FASII	Fatty Acids and Lipids	rxn06023
outer membrane lipoprotein receptor	peg.463			
Alanine racemase (EC 5.1.1.1)	peg.464	Alanine_biosynthesis|Pyruvate_Alanine_Serine_Interconversions	Amino Acids and Derivatives|Carbohydrates	rxn00283
MazF: sequence-specific endoribonuclease that cleaves mRNA to inhibit protein synthesis	peg.466			
"RsbR, positive regulator of sigma-B"	peg.467|peg.718|peg.1322			
"RsbS, negative regulator of sigma-B"	peg.468			
anti-sigma B factor RsbT	peg.469			
"Serine phosphatase RsbU, regulator of sigma subunit"	peg.470|peg.3417			
anti sigma b factor antagonist RsbV	peg.471|peg.2352			
anti-sigma F factor antagonist (spoIIAA-2)	peg.471|peg.2352			
Serine-protein kinase rsbW (EC 2.7.11.1)	peg.472			
RNA polymerase sigma factor SigB	peg.473	"Biofilm_formation_in_Staphylococcus|Methicillin_resistance_in_Staphylococci|Transcription_initiation,_bacterial_sigma_factors"	Regulation and Cell signaling|Virulence|RNA Metabolism	
Phosphoserine phosphatase rsbX (EC 3.1.3.3)	peg.474			rxn02046|rxn00420
"Transcriptional regulator, MarR family"	peg.477|peg.527|peg.529|peg.1051|peg.1336|peg.1369|peg.1378|peg.1958|peg.3374|peg.3511|peg.3514|peg.4060			
Transcription accessory protein (S1 RNA-binding domain)	peg.478			
Putative metallopeptidase (Zinc) SprT family	peg.479			
Integrase	peg.480			
YDCM protein	peg.481			
"transcriptional regulator, Cro/CI family"	peg.482			
regulation of the levansucrase gene (sacB)	peg.483			
YDCP protein	peg.485			
FtsK/SpoIIIE family protein	peg.486			
"Transcriptional regulator, Cro/CI family"	peg.487|peg.1877			
ABC transporter binding periplasmic protein ydcS	peg.488			
ABC transporter ATP-binding protein ydcT	peg.489			
YDDB protein	peg.491			
"conjugal transfer protein, putative"	peg.494			
DUF1874 domain-containing protein	peg.495			
"lipoprotein, NLP/P60 family"	peg.497			
regulator of the activity of phosphatase RapI	peg.502			
Luciferase-like monooxygenase (EC 1.14.-.-)	peg.504|peg.3404			
negative regulation of glyA transcription and KinB-dependent sporulation	peg.505|peg.506			
Isochorismatase (EC 3.3.2.1)	peg.507	"Chorismate:_Intermediate_for_synthesis_of_PAPA_antibiotics,_PABA,_anthranilate,_3-hydroxyanthranilate_and_more.|Siderophore_enterobactin_biosynthesis_and_ferric_enterbactin_transport"	Amino Acids and Derivatives|Virulence	rxn02177
ABC transporter permease protein yddR	peg.508			
ABC transporter binding periplasmic protein yddS	peg.509			
ThiJ/PfpI family	peg.511|peg.1882			
Cold shock protein CspC	peg.512	"Cold_shock,_CspA_family_of_proteins"	Stress Response	
CarD-like transcriptional regulator	peg.513			
YDZE protein	peg.514			
transcriptional regulator (AraC/XylS family)	peg.515|peg.701|peg.1909|peg.3018			
"Transporter, Drug/Metabolite Exporter family"	peg.516|peg.536|peg.3929			
"transcriptional regulator, GntR family"	peg.518|peg.906|peg.3049			
Tetracycline resistance protein	peg.519|peg.3998			
DUF1801 domain-containing protein	peg.521			
"Integral membrane protein, DUF6"	peg.523			
AMINOTRANSFERASE CLASS-I (EC 2.6.1.-)	peg.524|peg.948			
Cinnamoyl ester hydrolase	peg.527|peg.529			
putative NAD(P)H oxidoreductase	peg.530|peg.3606			
MFS permease	peg.531			
"Transcriptional regulator, TetR family"	peg.532|peg.686			
Arsenical resistance operon repressor	peg.533|peg.2583	Arsenic_resistance	Virulence	
Arsenic efflux pump protein	peg.534	Arsenic_resistance	Virulence	rxn05507|rxn05506
"acetyltransferase, GNAT family"	peg.535|peg.560|peg.577|peg.692|peg.1031|peg.1100|peg.1185|peg.1205|peg.1857|peg.2374|peg.2836|peg.2942|peg.3395|peg.3956|peg.3992|peg.4074|peg.4078			
Membrane protein ydfJ	peg.543			
carboxylesterase NA	peg.544			
putative transport protein	peg.545|peg.3869			
"transcriptional regulator, MerR family"	peg.546|peg.2703|peg.4086			
Cobalt-zinc-cadmium resistance protein	peg.547	Cobalt-zinc-cadmium_resistance	Virulence	
Dihydropteridine reductase (EC 1.5.1.34)	peg.548|peg.566|peg.783|peg.1959	Pterin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn03975|rxn01314|rxn05088|rxn03976
Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-)	peg.548|peg.566|peg.783|peg.1959			rxn03975|rxn01314|rxn05088|rxn03976
Glyoxalase family protein	peg.549|peg.716|peg.824|peg.1289|peg.1961	Serine-glyoxylate_cycle	Carbohydrates	rxn01834
"Membrane protein, distant similarity to thiosulphate:quinone oxidoreductase DoxD"	peg.550			
YDFR protein	peg.553			
probable membrane protein yetF	peg.554|peg.714|peg.1308|peg.2771			
YDGC protein	peg.558			
ATP-binding transport protein	peg.561			
D-serine/D-alanine/glycine transporter	peg.562|peg.2712	Glycine_and_Serine_Utilization|Pyruvate_Alanine_Serine_Interconversions	Amino Acids and Derivatives|Carbohydrates	rxn05649|rxn05495|rxn05582|rxn05494
nuclease inhibitor	peg.563			
YDGG protein	peg.564			
Putative membrane protein	peg.565			
"transcriptional regulator, MarR family"	peg.567|peg.1317|peg.2176|peg.3292|peg.3651|peg.4077			
Bicyclomycin resistance protein	peg.568			
"Spore protein YdhD, not involved in spore germination"	peg.571			
Macrolide glycosyltransferase (EC 2.4.1.-)	peg.572|peg.1223|peg.1947			
membrane protein	peg.573|peg.1784|peg.3528			
Alkaline phosphatase (EC 3.1.3.1)	peg.574|peg.941			rxn02166|rxn00743|rxn03167
YdhG-like protein	peg.575			
Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1)	peg.578|peg.3766	Purine_conversions	Nucleosides and Nucleotides	rxn01352
DUF1541 domain-containing protein	peg.579			
major facilitator family transporter	peg.580|peg.740|peg.791|peg.1058|peg.2907|peg.3652			
"PTS system, cellobiose-specific IIB component (EC 2.7.1.69)"	peg.581|peg.3864	Beta-Glucoside_Metabolism	Carbohydrates	rxn05518
"PTS system, cellobiose-specific IIA component (EC 2.7.1.69)"	peg.582|peg.3862	Beta-Glucoside_Metabolism	Carbohydrates	rxn05518
"PTS system, cellobiose-specific IIC component (EC 2.7.1.69)"	peg.583|peg.3844|peg.3863	Beta-Glucoside_Metabolism	Carbohydrates	rxn05518
Fructokinase (EC 2.7.1.4)	peg.586|peg.617	"Fructose_utilization|Mannitol_Utilization|Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization|Sucrose_Metabolism|Sucrose_utilization|Sucrose_utilization_Shewanella"	Carbohydrates	rxn00547
Mannose-6-phosphate isomerase (EC 5.3.1.8)	peg.587|peg.1203|peg.3586	Alginate_metabolism|Mannose_Metabolism	Cell Wall and Capsule|Carbohydrates	rxn00559
"Mannan endo-1,4-beta-mannosidase precursor (EC 3.2.1.78)"	peg.588			
Thiamine-monophosphate kinase (EC 2.7.4.16)	peg.590	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00438
"ATPase YjeE, predicted to have essential role in cell wall biosynthesis"	peg.591			rxn10198
"Inactive homolog of metal-dependent proteases, putative molecular chaperone"	peg.592	Ribosome_biogenesis_bacterial|YrdC-YciO	Protein Metabolism|RNA Metabolism	
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	peg.593	Ribosome_biogenesis_bacterial	Protein Metabolism	
FIG134348: essential endopeptidase	peg.594	Macromolecular_synthesis_operon|YrdC-YciO	Macromolecular Synthesis|RNA Metabolism	
ABC transport system ATP-binding protein	peg.595			
Molybdenum cofactor biosynthesis protein C	peg.596	Molybdopterin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)	peg.597	Oxidative_stress	Stress Response	
Twin-arginine translocation protein TatA	peg.598	Twin-arginine_translocation_system|YgfZ	"Protein Metabolism|Cofactors, Vitamins, Prosthetic Groups, Pigments"	
CAAX amino terminal protease family	peg.601			
Heat shock protein 60 family co-chaperone GroES	peg.602	GroEL_GroES	Protein Metabolism	
Heat shock protein 60 family chaperone GroEL	peg.603	GroEL_GroES|Staphylococcal_pathogenicity_islands_SaPI	Protein Metabolism|Virulence	
DNA-cytosine methyltransferase (EC 2.1.1.37)	peg.606|peg.607			rxn05294
Type II restriction-modification system restriction subunit	peg.610			
Sorbitol operon transcription regulator	peg.614	"D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization|Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization"	Carbohydrates	
Sorbitol dehydrogenase (EC 1.1.1.14)	peg.615	"D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization|Dihydroxyacetone_kinases|Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization"	Carbohydrates	rxn00634
Glucitol/sorbitol-specific transport protein gutA	peg.616	"D-Sorbitol(D-Glucitol)_and_L-Sorbose_Utilization|Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization"	Carbohydrates	rxn05648|rxn09661
Phage shock protein A	peg.618			
Major myo-inositol transporter IolT	peg.623	Inositol_catabolism	Carbohydrates	rxn05593
"2,3-butanediol dehydrogenase, R-alcohol forming, (R)- and (S)-acetoin-specific (EC 1.1.1.4)"	peg.624	"Acetoin,_butanediol_metabolism"	Carbohydrates	rxn02112
Non-heme chloroperoxidase (EC 1.11.1.10)	peg.628|peg.1090			
alternate gene name: ydjQ	peg.629			
Spore coat protein A	peg.630	Bsub-Spore-Coat	Cell Wall and Capsule	
gamma-aminobutyrate (GABA) permease	peg.631			rxn05475|rxn05564
YeaB (Cation efflux protein)	peg.632			
FIG022979: MoxR-like ATPases	peg.633			
"FIG001454: Transglutaminase-like enzymes, putative cysteine proteases"	peg.635			
GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)	peg.636	Purine_conversions|Staphylococcal_pathogenicity_islands_SaPI	Nucleosides and Nucleotides|Virulence	rxn00917
Xanthine/uracil/thiamine/ascorbate permease family protein	peg.637|peg.3002			rxn05201|rxn05202|rxn09657|rxn05197
Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)	peg.643	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	rxn05229
Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)	peg.644	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	rxn05229
Adenylosuccinate lyase (EC 4.3.2.2)	peg.645	De_Novo_Purine_Biosynthesis|Purine_conversions	Nucleosides and Nucleotides	rxn00800|rxn03136
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	peg.646	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	rxn03147
"Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3)"	peg.647	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	rxn03084
"Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)"	peg.648	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	rxn03084
"Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)"	peg.649	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	rxn03084
Amidophosphoribosyltransferase (EC 2.4.2.14)	peg.650	De_Novo_Purine_Biosynthesis|YgfZ	"Nucleosides and Nucleotides|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00790
Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	peg.651	De_Novo_Purine_Biosynthesis|YgfZ	"Nucleosides and Nucleotides|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02937
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	peg.652	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	rxn03004
IMP cyclohydrolase (EC 3.5.4.10)	peg.653	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	rxn03137|rxn00832
Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	peg.653	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	rxn03137|rxn00832
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)	peg.654	De_Novo_Purine_Biosynthesis	Nucleosides and Nucleotides	rxn02895
"transcriptional regulator, AsnC family"	peg.655			
Adenine deaminase (EC 3.5.4.2)	peg.657	Purine_conversions	Nucleosides and Nucleotides	rxn00926
His repressor	peg.659			
Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)	peg.660	"Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis|Photorespiration_(oxidative_C2_cycle)"	Amino Acids and Derivatives|Carbohydrates	rxn05760
PcrB-like protein	peg.661			
ATP-dependent DNA helicase UvrD/PcrA	peg.662	"DNA_repair,_bacterial_UvrD_and_related_helicases"	DNA Metabolism	rxn05294
DNA ligase (EC 6.5.1.2)	peg.663	DNA_Repair_Base_Excision|NAD_and_NADP_cofactor_biosynthesis_global|NAD_consumption	"DNA Metabolism|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05294
Putative pheromone cAM373 precursor lipoprotein CamS	peg.664			
putative protein kinase	peg.665			
Peptide transport system permease protein sapB (TC 3.A.1.5.5)	peg.666	ABC_transporter_peptide_(TC_3.A.1.5.5)	Membrane Transport	
Sodium/proline symporter	peg.667			rxn05221
Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.-)	peg.668	Asp-tRNA(Asn)_transamidation	Protein Metabolism	rxn05296
Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.-)	peg.668	Glu-tRNA(Gln)_transamidation	Protein Metabolism	rxn05296
Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.-)	peg.669	Asp-tRNA(Asn)_transamidation	Protein Metabolism	rxn05296
Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)	peg.669	Glu-tRNA(Gln)_transamidation	Protein Metabolism	rxn05296
Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.-)	peg.670	Asp-tRNA(Asn)_transamidation	Protein Metabolism	rxn05296
Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.-)	peg.670	Glu-tRNA(Gln)_transamidation	Protein Metabolism	rxn05296
TetR family transcriptional regulator probably coupled to RND multidrug efflux transporter	peg.671			
Swarming motility protein SwrC	peg.672	Bacterial_motility:Gliding	Motility and Chemotaxis	
Transcription regulator [contains diacylglycerol kinase catalytic domain]	peg.673|peg.2404|peg.2997			
"RNA methyltransferase, TrmA family"	peg.674|peg.802			
Site-specific DNA recombinase	peg.675			
"site-specific recombinase, resolvase family"	peg.676|peg.1791			
"FIG045374: Type II restriction enzyme, methylase subunit YeeA"	peg.677			
"FIG006126: DNA helicase, restriction/modification system component YeeB"	peg.678			
YeeC-like protein	peg.679			
"Putative toxin component near putative ESAT-related proteins, repetitive"	peg.682	ESAT-6_proteins_secretion_system_in_Firmicutes	Virulence	
alternate gene name: yeeL	peg.687			
Oxidoreductase	peg.688			
Polypeptide composition of the spore coat	peg.689			
required for the assembly of CotJC	peg.689			
Polypeptide composition of the spore coat protein CotJB	peg.690	Bsub-Spore-Coat	Cell Wall and Capsule	
Polypeptide composition of the spore coat protein CotJC	peg.691	Bsub-Spore-Coat	Cell Wall and Capsule	
YESL protein	peg.694			
two-component response regulator	peg.696|peg.759|peg.830|peg.1327			
"Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component"	peg.697	L-rhamnose_utilization	Carbohydrates	rxn05646|rxn05598|rxn05170
"Predicted rhamnose oligosaccharide ABC transport system, permease component 2"	peg.698	L-rhamnose_utilization	Carbohydrates	rxn05646|rxn05598|rxn05170
"Predicted rhamnose oligosaccharide ABC transport system, permease component"	peg.699	L-rhamnose_utilization	Carbohydrates	rxn05646|rxn05598|rxn05170
Rhamnogalacturonides degradation protein RhiN	peg.700	L-rhamnose_utilization	Carbohydrates	
rhamnogalacturonan acetylesterase	peg.702|peg.707|peg.3917	L-rhamnose_utilization	Carbohydrates	
YESV protein	peg.704			
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster	peg.705|peg.706	L-rhamnose_utilization	Carbohydrates	
Beta-galactosidase (EC 3.2.1.23)	peg.708|peg.3419	Lactose_and_Galactose_Uptake_and_Utilization|Lactose_utilization	Carbohydrates	rxn00816
lipoprotein	peg.710|peg.3019			
"ABC-type polysaccharide transport system, permease component"	peg.711			rxn05646|rxn05598|rxn05170
transmembrane lipoprotein	peg.712|peg.3017			
hydrolytic enzyme	peg.713			
Antibiotic biosynthesis monooxygenase domain-containing protein	peg.715			
regulator of sigma-B	peg.717			
MarR family transcriptional regulatory protein	peg.722			
Salicylate hydroxylase (EC 1.14.13.1)	peg.723	Phenylpropanoid_compound_degradation|Salicylate_ester_degradation	Metabolism of Aromatic Compounds	rxn03906|rxn04745|rxn04724|rxn00589|rxn04748
NADPH-cytochrome P450 reductase	peg.725|peg.2719			
Phosphoglycerol transferase	peg.726|peg.771|peg.2488|peg.3342			
Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33)	peg.727	"Acetoin,_butanediol_metabolism|dTDP-rhamnose_synthesis"	Carbohydrates|Cell Wall and Capsule	rxn00702
"Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45)"	peg.728	"Acetoin,_butanediol_metabolism"	Carbohydrates	rxn01750
Putative glycosyltransferase	peg.729			
Fosmidomycin resistance protein	peg.732			
5'-nucleotidase yjjG (EC 3.1.3.5)	peg.733			rxn01367|rxn00708|rxn01218|rxn01704|rxn01139|rxn01445|rxn01549|rxn00913|rxn01145|rxn01507|rxn00132|rxn02400|rxn01670|rxn01961|rxn00363|rxn00831
Aldehyde dehydrogenase (EC 1.2.1.3)	peg.735|peg.1936|peg.3801|peg.3888|peg.3991	"Entner-Doudoroff_Pathway|Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria|Methylglyoxal_Metabolism|Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"	Carbohydrates|Fatty Acids and Lipids	rxn05734|rxn00979|rxn02853|rxn00506|rxn05735|rxn01851|rxn01286
Methyl-accepting chemotaxis protein	peg.736			
COG0488: ATPase components of ABC transporters with duplicated ATPase domains	peg.737	Folate_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
HTH-type transcriptional regulator yfmP	peg.739			
ATP-dependent RNA helicase YfmL	peg.743	"ATP-dependent_RNA_helicases,_bacterial"	RNA Metabolism	
putative oxidoreductase	peg.745|peg.2687			
Macrolide-efflux protein	peg.746|peg.838|peg.1149|peg.1405|peg.3320			
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3)	peg.749|peg.3336	ABC_transporter_ferrichrome_(TC_3.A.1.14.3)|Hemin_transport_system|Iron_acquisition_in_Vibrio	Membrane Transport|Virulence	rxn05188|rxn05558|rxn05148
"Heme ABC type transporter HtsABC, permease protein HtsC"	peg.750	"Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"	Virulence	rxn05148
"Heme ABC type transporter HtsABC, permease protein HtsB"	peg.751	"Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"	Virulence	rxn05148
"Heme ABC type transporter HtsABC, heme-binding protein"	peg.752|peg.1033	"Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"	Virulence	rxn05148
pectate lyase	peg.756|peg.1868			
2-oxoglutarate/malate translocator	peg.757	Photorespiration_(oxidative_C2_cycle)	Carbohydrates	rxn05603|rxn05493|rxn05605
Mg(2+) Citrate transporter (TC 2.A.11.1.1)	peg.761	"Citrate_Metabolism,_Transport,_and_Regulation"	Carbohydrates	rxn05214
Nitric oxide synthase oxygenase (EC 1.-.-.-)	peg.763	Pterin_metabolism_3	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00399
"Acylphosphate phosphohydrolase (EC 3.6.1.7), putative"	peg.764	"Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"	Carbohydrates	rxn01103|rxn00227
Uncharacterized protein conserved in bacteria	peg.765			
YFLH protein	peg.768			
"PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69)"	peg.770	Chitin_and_N-acetylglucosamine_utilization|Sialic_Acid_Metabolism	Carbohydrates|Cell Wall and Capsule	rxn05485
"PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)"	peg.770	Chitin_and_N-acetylglucosamine_utilization|Sialic_Acid_Metabolism	Carbohydrates|Cell Wall and Capsule	rxn05485
Na(+)-linked D-alanine glycine permease	peg.775			rxn10537|rxn05494
Spore germination protein KB	peg.776			
germination protein	peg.778			
"PTS system, trehalose-specific IIB component (EC 2.7.1.69)"	peg.780	Trehalose_Uptake_and_Utilization	Carbohydrates	rxn02005
"PTS system, trehalose-specific IIC component (EC 2.7.1.69)"	peg.780	Trehalose_Uptake_and_Utilization	Carbohydrates	rxn02005
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	peg.781	Trehalose_Uptake_and_Utilization	Carbohydrates	rxn00606
Trehalose operon transcriptional repressor	peg.782	Trehalose_Uptake_and_Utilization	Carbohydrates	
"2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)"	peg.784	Purine_conversions|pyrimidine_conversions	Nucleosides and Nucleotides	rxn01367|rxn00708|rxn02522|rxn01218|rxn03483|rxn01704|rxn02762|rxn01139|rxn01445|rxn01549|rxn00913|rxn01145|rxn01507|rxn02521|rxn00132|rxn02400|rxn01670|rxn01961|rxn00363|rxn00831
5'-nucleotidase (EC 3.1.3.5)	peg.784|peg.3243	Purine_conversions|pyrimidine_conversions	Nucleosides and Nucleotides	rxn01367|rxn00708|rxn02522|rxn01218|rxn03483|rxn00212|rxn01704|rxn02762|rxn09348|rxn01139|rxn09355|rxn01445|rxn01549|rxn09340|rxn00913|rxn01145|rxn01507|rxn09341|rxn02521|rxn00132|rxn02400|rxn01670|rxn01961|rxn00363|rxn00831
ThiJ/PfpI family protein	peg.785|peg.2705			
transport protein	peg.786|peg.1225			
Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48)	peg.788|peg.3700	Vibrio_Polysaccharide_(VPS)_Biosynthesis	Virulence	
Ribonuclease BN (EC 3.1.-.-)	peg.790	tRNA_processing	RNA Metabolism	
calcium/proton exchanger	peg.792			rxn05514
Potassium efflux system KefA protein	peg.794|peg.1423			rxn05206
Small-conductance mechanosensitive channel	peg.794|peg.939|peg.1423			rxn05206
3-hydroxyisobutyrate dehydrogenase	peg.799			rxn01480
Magnesium and cobalt transport protein CorA	peg.800	Campylobacter_Iron_Metabolism	Virulence	rxn05616|rxn10474
tRNA dihydrouridine synthase B	peg.803	tRNA_modification_Archaea_Henri	RNA Metabolism	
alternate gene name: yztA	peg.805			
Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)	peg.806	"Acetoin,_butanediol_metabolism|Dehydrogenase_complexes"	Carbohydrates	rxn09953
Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-)	peg.807	"Acetoin,_butanediol_metabolism|Dehydrogenase_complexes"	Carbohydrates	rxn09953
Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)	peg.808	"Acetoin,_butanediol_metabolism|Dehydrogenase_complexes|Lipoic_acid_metabolism"	"Carbohydrates|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn09953
Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)	peg.809	"Acetoin,_butanediol_metabolism|Dehydrogenase_complexes"	Carbohydrates	rxn09953
Transcriptional activator of acetoin dehydrogenase operon AcoR	peg.810	"Acetoin,_butanediol_metabolism|Dehydrogenase_complexes"	Carbohydrates	
Maltose-6'-phosphate glucosidase (EC 3.2.1.122)	peg.818	Maltose_and_Maltodextrin_Utilization|Trehalose_Uptake_and_Utilization	Carbohydrates	rxn00607
"PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)"	peg.820	Maltose_and_Maltodextrin_Utilization	Carbohydrates	rxn05226|rxn05607
"PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69)"	peg.820	Maltose_and_Maltodextrin_Utilization	Carbohydrates	rxn05226|rxn05607
Multidrug resistance ABC transporter ATP-binding and permease protein	peg.821|peg.822|peg.868|peg.3488	Multidrug_Resistance_Efflux_Pumps	Virulence	
L-rhamnose operon transcriptional activator rhaR	peg.825	L-rhamnose_utilization	Carbohydrates	
probable sugar transport protein	peg.826			
Oxidoreductase (EC 1.1.1.-)	peg.828|peg.3359			
putative two-component system sensor kinase	peg.829|peg.3895			
putative ABC transporter (ATP-binding protein)	peg.833|peg.3333			
alternate gene name: yfiP	peg.835			
YFIQ protein	peg.836			
"Chain A, Crystal Structure Of Yfir, A Putative Transcriptional Regulator From Bacillus Subtilis"	peg.837			
"drug resistance transporter, EmrB/QacA family"	peg.840|peg.3293|peg.3527			
"Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1)"	peg.844	ABC_transporter_iron(III)_dicitrate_(TC_3.A.1.14.1)|Vibrioferrin_synthesis	Membrane Transport|Virulence	rxn05557
Iron(III) dicitrate transport system permease protein fecD (TC 3.A.1.14.1)	peg.845|peg.846	ABC_transporter_iron(III)_dicitrate_(TC_3.A.1.14.1)	Membrane Transport	rxn05557
Phenazine biosynthesis protein PhzF	peg.847	Phenazine_biosynthesis	Secondary Metabolism	
nitroreductase family protein	peg.848			
Cell division inhibitor	peg.851			
Regulatory protein recX	peg.852			
Transcription regulator CDS_ID OB0894	peg.853			
Conserved protein YfhJ	peg.855			
YFHK protein	peg.856|peg.3604			
Epoxide hydrolase (EC 3.3.2.9)	peg.858			rxn04821|rxn04834|rxn04820|rxn04885
stress response protein	peg.859			
A/G-specific adenine glycosylase (EC 3.2.2.-)	peg.862	"DNA_repair,_bacterial"	DNA Metabolism	
YfhS protein	peg.863			
Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10)	peg.864	Fatty_Acid_Biosynthesis_FASII	Fatty Acids and Lipids	rxn05357|rxn05391|rxn05412|rxn05370|rxn05428|rxn05354|rxn05378|rxn05387|rxn05463|rxn05374|rxn05424|rxn05416|rxn05352|rxn05432|rxn05399|rxn05403|rxn05420|rxn05356|rxn05351|rxn05362|rxn05355|rxn05382|rxn05366|rxn05395|rxn05407|rxn05353
"Small acid-soluble spore protein, gamma-type SASP"	peg.865	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	
Cysteinyl-tRNA synthetase related protein	peg.867			
"lipoprotein, putative"	peg.869|peg.1459|peg.1482			
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	peg.870|peg.2815	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01629
"Thiol peroxidase, Bcp-type (EC 1.11.1.15)"	peg.871			
"Peroxide stress regulator PerR, FUR family"	peg.872	Oxidative_stress	Stress Response	
CDS_ID OB0907	peg.874			
Peptidase E (EC 3.4.11.2)	peg.877			
Thiamin biosynthesis protein ThiC	peg.878	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02305
FAD-linked oxidoreductase family	peg.879|peg.3458			
"positive regulation of extracellular enzyme genes (amyE, aprE, nprE)"	peg.880			
Catalase (EC 1.11.1.6)	peg.881|peg.3868|peg.3910	Oxidative_stress|Photorespiration_(oxidative_C2_cycle)|Protection_from_Reactive_Oxygen_Species	Stress Response|Carbohydrates	rxn00006
Alkanesulfonates ABC transporter ATP-binding protein	peg.882	Alkanesulfonate_assimilation|Alkanesulfonates_Utilization	Sulfur Metabolism	rxn05621|rxn05594|rxn05656|rxn05552|rxn05599|rxn05512|rxn05585|rxn05620|rxn05172
Alkanesulfonates-binding protein	peg.883	Alkanesulfonate_assimilation|Alkanesulfonates_Utilization	Sulfur Metabolism	rxn05621|rxn05594|rxn05656|rxn05552|rxn05599|rxn05512|rxn05585|rxn05620|rxn05172
Alkanesulfonates transport system permease protein	peg.884	Alkanesulfonate_assimilation|Alkanesulfonates_Utilization	Sulfur Metabolism	rxn05621|rxn05594|rxn05656|rxn05552|rxn05599|rxn05512|rxn05585|rxn05620|rxn05172
Alkanesulfonate monooxygenase (EC 1.14.14.5)	peg.885	Alkanesulfonate_assimilation|Alkanesulfonates_Utilization	Sulfur Metabolism	rxn08471|rxn10067|rxn08468|rxn05737|rxn08467|rxn08469|rxn08470
Predicted transcriptional regulator	peg.889			
Iron-sulfur cluster-binding protein	peg.891			
Methylase homolog	peg.892|peg.894|peg.895			
tRNA (cytosine34-2'-O-)-methyltransferase (EC 2.1.1.-)	peg.893	tRNA_modification_Bacteria	RNA Metabolism	rxn05295
YgaT-like protein	peg.896			
serine protein kinase	peg.897			
Glycosyltransferase (EC 2.4.1.-)	peg.898|peg.2250			
YHBI protein	peg.899			
Multidrug resistance protein [function not yet clear]	peg.900	"Multidrug_Resistance,_2-protein_version_Found_in_Gram-positive_bacteria"	Virulence	
Membrane component of multidrug resistance system	peg.901	"Multidrug_Resistance,_2-protein_version_Found_in_Gram-positive_bacteria"	Virulence	
Cold shock protein CspD	peg.910	"Cold_shock,_CspA_family_of_proteins"	Stress Response	
Methionine ABC transporter substrate-binding protein	peg.911|peg.3278	Methionine_Biosynthesis|Methionine_Degradation|Staphylococcal_pathogenicity_islands_SaPI	Amino Acids and Derivatives|Virulence	rxn05219|rxn05183
Proton/sodium-glutamate symport protein	peg.913			rxn05298
Lipoprotein yhcN precursor	peg.915			
Endonuclease yhcR precursor (EC 3.1.31.-)	peg.919			
"Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type"	peg.921	Ribosome_biogenesis_bacterial|rRNA_modification_Bacteria	Protein Metabolism|RNA Metabolism	
"hydrolase, haloacid dehalogenase-like family"	peg.924|peg.1114|peg.3592|peg.3636			
Carbon-nitrogen hydrolase	peg.925|peg.1396			
Probable aminotransferase (EC 2.6.-.-)	peg.926			
Glycerol uptake operon antiterminator regulatory protein	peg.927	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	
Glycerol uptake facilitator protein	peg.928	"Dihydroxyacetone_kinases|Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization|Glycerol_fermenation_to_1,3-propanediol|Osmoregulation"	Carbohydrates|Fatty Acids and Lipids|Stress Response	rxn05581
Glycerol kinase (EC 2.7.1.30)	peg.929	Dihydroxyacetone_kinases|Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization|Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria|MLST	Carbohydrates|Fatty Acids and Lipids|Virulence	rxn00615
Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.99.5)	peg.930	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization|Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria|Respiratory_dehydrogenases_1	Carbohydrates|Fatty Acids and Lipids|Respiration	rxn00616|rxn05739
Phosphomannomutase (EC 5.4.2.8)	peg.931	Alginate_metabolism|Mannose_Metabolism|Perosamine_Synthesis_Vibrio	Cell Wall and Capsule|Carbohydrates	rxn01329
Azoreductase	peg.934			
Invasion associated protein p60	peg.937|peg.1946|peg.3486			
Nitrite-sensitive transcriptional repressor NsrR	peg.938	Oxidative_stress|Rrf2_family_transcriptional_regulators	Stress Response|RNA Metabolism	
Stage V sporulation protein involved in spore cortex synthesis (SpoVR)	peg.940			
cell wall lytic activity	peg.942			
negative regulation of the citrate synthase I gene (citA)	peg.943			
Citrate synthase (si) (EC 2.3.3.1)	peg.944|peg.2917	Glyoxylate_Synthesis|Glyoxylate_bypass|Serine-glyoxylate_cycle|TCA_Cycle	Carbohydrates	rxn00256
sodium-dependent transporter	peg.947|peg.1939			
Sigma-M negative effector	peg.951			rxn05295
"RNA polymerase sigma-70 factor, ECF subfamily"	peg.952			
putative aldo/keto reductase	peg.953			
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	peg.954	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids and Lipids	rxn10215|rxn10217|rxn10219|rxn10212|rxn10214|rxn10216|rxn10211|rxn10218|rxn10213
Hemolysins and related proteins containing CBS domains	peg.955|peg.959|peg.2479|peg.2663|peg.3133			
HTH-type transcriptional regulator cueR	peg.956			
Aspartate/tyrosine/aromatic aminotransferase	peg.957	"Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress"	Amino Acids and Derivatives	rxn00260|rxn00527|rxn00493
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	peg.962	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization	Carbohydrates	rxn01073|rxn08669|rxn00758
"ABC-type amino acid transport system, permease component yhdY"	peg.964			
NAD-dependent protein deacetylase of SIR2 family	peg.965	"NAD_and_NADP_cofactor_biosynthesis_global|NAD_consumption|Protein_Acetylation_and_Deacetylation_in_Bacteria|Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate|Redox-dependent_regulation_of_nucleus_processes"	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Protein Metabolism|Carbohydrates|Stress Response"	
Peptidoglycan N-acetylglucosamine deacetylase (EC 3.5.1.-)	peg.966			
D-alanine aminotransferase (EC 2.6.1.21)	peg.967	"Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress|Pyruvate_Alanine_Serine_Interconversions"	Amino Acids and Derivatives|Carbohydrates	
Na+/H+ antiporter NhaC	peg.968			
Stress response protein nhaX	peg.969			
"ABC transporter, ATP-binding/permease protein"	peg.971|peg.972|peg.1434|peg.1435			
"oxidoreductase, putative"	peg.973			
"Small acid-soluble spore protein, beta-type SASP"	peg.975|peg.1999|peg.2960	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	
DUF445 domain-containing transmembrane protein	peg.979			
DNA alkylation repair enzyme	peg.981			
"Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)"	peg.984	Heme_and_Siroheme_Biosynthesis|YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn04704
sodium/hydrogen exchanger family protein	peg.985			
trkA domain protein	peg.986			
enoyl-CoA hydratase/isomerase family protein	peg.988			
"ABC transporter, permease protein (putative)"	peg.990			
DNA repair exonuclease family protein YhaO	peg.991	"DNA_repair,_bacterial"	DNA Metabolism	
DNA double-strand break repair rad50 ATPase	peg.992	Rad50-Mre11::SbcD-SbcC_DNA_Repair_Module	DNA Metabolism	
CMP-binding factor	peg.993			
"negative regulation of sporulation and extracellular proteases genes (aprE, nprE, sin)"	peg.999			
Substrate-specific component TrpP of tryptophan ECF transporter	peg.1001			rxn05663
Phosphoserine aminotransferase (EC 2.6.1.52)	peg.1002	"Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress|Glycine_and_Serine_Utilization|Pyridoxin_(Vitamin_B6)_Biosynthesis|Serine_Biosynthesis"	"Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02914|rxn03445
cell-cycle regulation (inhibition of cell division)	peg.1003			
regulates both components of the protein secretion apparatus and transcription of secretory proteins	peg.1004|peg.1005			
"alternate gene name: prsT, yhaB"	peg.1006			
N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)	peg.1007			rxn00469
"Uncharacterized protein, homolog of B.subtilis yhgC"	peg.1010			
Penicillin-binding protein 1F (PBP-1F)	peg.1011			
Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	peg.1012	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02288
"Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)"	peg.1013	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00224
"Protoporphyrinogen IX oxidase, aerobic (EC 1.3.3.4)"	peg.1014	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02304
Phage infection protein	peg.1016			
3-oxoacyl-[acyl-carrier-protein] synthase III (EC 2.3.1.41)	peg.1017			rxn05460|rxn05413|rxn05348|rxn05346|rxn05344|rxn05350|rxn05349|rxn05396|rxn05363|rxn05388|rxn05429|rxn05359|rxn05367|rxn05417|rxn05371|rxn05347|rxn05400|rxn05425|rxn05421|rxn05392|rxn05409|rxn05404|rxn05375|rxn05345|rxn05379|rxn05384|rxn05343
Deblocking aminopeptidase (EC 3.4.11.-)	peg.1020	Protein_degradation	Protein Metabolism	
Sodium/glutamate symport protein	peg.1022			rxn05298|rxn05297
Metal-dependent hydrolase (EC 3.-.-.-)	peg.1024			
Lipoate-protein ligase A	peg.1025|peg.2457|peg.3770	Dehydrogenase_complexes|Glycine_cleavage_system|Lipoic_acid_metabolism	"Carbohydrates|Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn07584|rxn07585
oxidoreductase ylbE	peg.1026			
"peptidase, M48 family"	peg.1029			
serine alkaline protease (subtilisin E)	peg.1030			
Alcohol dehydrogenase (EC 1.1.1.1)	peg.1032|peg.1847|peg.2704	Fermentations:_Lactate|Fermentations:_Mixed_acid|Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Carbohydrates|Fatty Acids and Lipids	rxn00543|rxn00763
Predicted broad substrate specificity phosphatase	peg.1034			
3-ketoacyl-CoA thiolase (EC 2.3.1.16)	peg.1035|peg.3288	Biotin_biosynthesis|Isoleucine_degradation|Serine-glyoxylate_cycle|n-Phenylalkanoic_acid_degradation	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Amino Acids and Derivatives|Carbohydrates|Metabolism of Aromatic Compounds"	rxn03248|rxn06510|rxn00676|rxn02804|rxn00874|rxn03243|rxn00178|rxn02680
Acetyl-CoA acetyltransferase (EC 2.3.1.9)	peg.1035|peg.3288	Acetyl-CoA_fermentation_to_Butyrate|Anaerobic_benzoate_metabolism|Archaeal_lipids|Butanol_Biosynthesis|Glyoxylate_bypass|Isoprenoid_Biosynthesis|MLST|Mevalonate_Branch_of_Isoprenoid_Biosynthesis	"Carbohydrates|Metabolism of Aromatic Compounds|Fatty Acids and Lipids|Cofactors, Vitamins, Prosthetic Groups, Pigments|Virulence"	rxn03248|rxn06510|rxn00676|rxn02804|rxn00874|rxn03243|rxn00178|rxn02680
Substrate-specific component BioY of biotin ECF transporter	peg.1037|peg.3209	Biotin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05223
oxidoreductase	peg.1039			
activation of the expression of late competence genes involved in DNA-binding and uptake and in recombination	peg.1042			
final autoregulatory control switch prior to competence development	peg.1042			
Na+/solute symporter	peg.1045|peg.1962			
Alkaline phosphatase like protein	peg.1048			
Oxygenase	peg.1050			
Glucose/mannose:H+ symporter GlcP	peg.1052	Trehalose_Uptake_and_Utilization	Carbohydrates	rxn05611|rxn05573
NTD biosynthesis operon putative oxidoreductase NtdC (EC 1.-.-.-)	peg.1053	Neotrehalosadiamine_(NTD)_Biosynthesis_Operon	Carbohydrates	
NTD biosynthesis operon putative hydrolase NtdB (EC 3.-.-.-)	peg.1054	Neotrehalosadiamine_(NTD)_Biosynthesis_Operon	Carbohydrates	
NTD biosynthesis operon protein NtdA	peg.1055	Neotrehalosadiamine_(NTD)_Biosynthesis_Operon	Carbohydrates	
NTD biosynthesis operon regulator NtdR	peg.1056	Neotrehalosadiamine_(NTD)_Biosynthesis_Operon	Carbohydrates	
Putative ammonia monooxygenase	peg.1057			
"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein oppA (TC 3.A.1.5.1)"	peg.1059|peg.1139|peg.1144	ABC_transporter_oligopeptide_(TC_3.A.1.5.1)	Membrane Transport	
"ATP-dependent nuclease, subunit B"	peg.1062	ATP-dependent_Nuclease	DNA Metabolism	
"ATP-dependent nuclease, subunit A"	peg.1063	ATP-dependent_Nuclease	DNA Metabolism	
Exonuclease SbcD	peg.1064	"DNA_repair,_bacterial"	DNA Metabolism	
Exonuclease SbcC	peg.1065	"DNA_repair,_bacterial"	DNA Metabolism	
"Protein GerPF, required for proper assembly of spore coat, mutations lead to super-dormant spore"	peg.1067			
"Protein GerPE, required for proper assembly of spore coat, mutations lead to super-dormant spore"	peg.1068			
"Protein GerPD, required for proper assembly of spore coat, mutations lead to super-dormant spore"	peg.1069			
"Protein GerPC, required for proper assembly of spore coat, mutations lead to super-dormant spore"	peg.1070			
"Protein GerPB, required for proper assembly of spore coat, mutations lead to super-dormant spore"	peg.1071			
"Protein GerPA, required for proper assembly of spore coat, mutations lead to super-dormant spore"	peg.1072			
Fumarylacetoacetate hydrolase family protein	peg.1075	Central_meta-cleavage_pathway_of_aromatic_compound_degradation|Pterin_carbinolamine_dehydratase|Pterin_metabolism_3	"Metabolism of Aromatic Compounds|Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Uncharacterized protein UPF0344	peg.1076			
"cell wall-associated protein precursor (CWBP23, CWBP52)"	peg.1077			
"Uncharacterized protein yisN, only in Bacillus"	peg.1078			
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	peg.1079|peg.3057|peg.3997	"Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"	Amino Acids and Derivatives	rxn00416
Phytoene synthase (EC 2.5.1.32)	peg.1080	Carotenoids	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05031|rxn01489|rxn02945
Na+ driven multidrug efflux pump	peg.1081|peg.1841|peg.2177			
putative transcriptional regulator	peg.1082|peg.1466			
Predicted transcriptional regulator of the myo-inositol catabolism operon	peg.1083	Inositol_catabolism	Carbohydrates	
Myo-inositol 2-dehydrogenase like (EC 1.1.1.18)	peg.1084			rxn00879
DinB protein	peg.1085			
pentapeptide repeat family protein	peg.1089			
Adenylylsulfate kinase (EC 2.7.1.25)	peg.1091|peg.1562	Cysteine_Biosynthesis|Inorganic_Sulfur_Assimilation|O-Methyl_Phosphoramidate_Capsule_Modification_in_Campylobacter|Sulfate_assimilation|Superpathway_of_cysteine_biosynthesis	Amino Acids and Derivatives|Sulfur Metabolism|Cell Wall and Capsule	rxn00361
"Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)"	peg.1092|peg.1561	Inorganic_Sulfur_Assimilation|Sulfate_assimilation	Sulfur Metabolism	rxn00379
Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10)	peg.1093|peg.1559	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	rxn05239|rxn05256
Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8)	peg.1093|peg.1559	Cysteine_Biosynthesis|Inorganic_Sulfur_Assimilation|Superpathway_of_cysteine_biosynthesis	Amino Acids and Derivatives|Sulfur Metabolism	rxn05239|rxn05256
Probable 2-phosphosulfolactate phosphatase (EC 3.1.3.71)	peg.1094			rxn04036
Phosphosulfolactate synthase (EC 4.4.1.19)	peg.1095	coenzyme_M_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn07307
putative mandelate racemase	peg.1097			
"5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)"	peg.1101	5-FCL-like_protein|Methionine_Biosynthesis|One-carbon_metabolism_by_tetrahydropterines|Serine-glyoxylate_cycle|YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Amino Acids and Derivatives|Carbohydrates"	rxn00910
Homolog of homocysteine-binding domain	peg.1101			rxn00910
Protein yajQ	peg.1102			
S1 RNA binding domain	peg.1103			
extracellular neutral protease B	peg.1110			
DegV family protein	peg.1111|peg.3554			
intracellular proteinase inhibitor BsuPI	peg.1113			
Putative hydrolase of the alpha/beta superfamily	peg.1115			
PaaD-like protein involved in Fe-S cluster assembly	peg.1116			
"probably aromatic ring hydroxylating enzyme, evidenced by COGnitor"	peg.1116			
"oxidoreductase, FAD-binding"	peg.1118			
Multidrug resistance protein B	peg.1119|peg.2378|peg.3038			
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	peg.1120	Arginine_Biosynthesis|Arginine_Biosynthesis_extended	Amino Acids and Derivatives	rxn02465
Glutamate N-acetyltransferase (EC 2.3.1.35)	peg.1121	Arginine_Biosynthesis|Arginine_Biosynthesis_extended	Amino Acids and Derivatives	rxn00192|rxn01636
N-acetylglutamate synthase (EC 2.3.1.1)	peg.1121	Arginine_Biosynthesis|Arginine_Biosynthesis_extended	Amino Acids and Derivatives	rxn00192|rxn01636
Acetylglutamate kinase (EC 2.7.2.8)	peg.1122	Arginine_Biosynthesis|Arginine_Biosynthesis_extended	Amino Acids and Derivatives	rxn01917
Acetylornithine aminotransferase (EC 2.6.1.11)	peg.1123	Arginine_Biosynthesis|Arginine_Biosynthesis_extended	Amino Acids and Derivatives	rxn01637
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	peg.1124|peg.1553	Macromolecular_synthesis_operon	Macromolecular Synthesis	rxn00414
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	peg.1125|peg.1554	Macromolecular_synthesis_operon	Macromolecular Synthesis	rxn00414
Ornithine carbamoyltransferase (EC 2.1.3.3)	peg.1126	Arginine_Biosynthesis|Arginine_Biosynthesis_extended|Arginine_Deiminase_Pathway|Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	rxn01019
positive regulator of comK	peg.1131			
"3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)"	peg.1134	Fatty_Acid_Biosynthesis_FASII	Fatty Acids and Lipids	rxn05460|rxn05413|rxn05348|rxn05346|rxn05344|rxn05350|rxn05349|rxn05396|rxn05363|rxn05388|rxn05429|rxn05359|rxn05367|rxn05417|rxn05371|rxn05347|rxn05400|rxn05425|rxn05421|rxn05392|rxn05409|rxn05404|rxn05375|rxn05345|rxn05379|rxn05384|rxn05343
"3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)"	peg.1135	Fatty_Acid_Biosynthesis_FASII|Unsaturated_Fatty_Acid_Metabolism|mycolic_acid_synthesis	Fatty Acids and Lipids|Cell Wall and Capsule	rxn05460|rxn05413|rxn05348|rxn05346|rxn05344|rxn05350|rxn05349|rxn05396|rxn05363|rxn05388|rxn05429|rxn05359|rxn05367|rxn05417|rxn05371|rxn05347|rxn05400|rxn05425|rxn05421|rxn05392|rxn05409|rxn05404|rxn05375|rxn05345|rxn05379|rxn05384|rxn05343
Oligopeptide transport ATP-binding protein oppD (TC 3.A.1.5.1)	peg.1137|peg.1147	ABC_transporter_oligopeptide_(TC_3.A.1.5.1)	Membrane Transport	
Oligopeptide transport ATP-binding protein oppF (TC 3.A.1.5.1)	peg.1138|peg.1148|peg.1302	ABC_transporter_oligopeptide_(TC_3.A.1.5.1)	Membrane Transport	
oligopeptide transport	peg.1140			
Oligopeptide transport system permease protein oppC (TC 3.A.1.5.1)	peg.1141|peg.1146	ABC_transporter_oligopeptide_(TC_3.A.1.5.1)	Membrane Transport	
Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	peg.1143	tRNA_aminoacylation	Protein Metabolism	rxn05296
Oligopeptide transport system permease protein oppB (TC 3.A.1.5.1)	peg.1145	ABC_transporter_oligopeptide_(TC_3.A.1.5.1)	Membrane Transport	
Arsenate reductase family protein	peg.1151|peg.2481			rxn08171
Negative regulator of genetic competence MecA	peg.1153|peg.2301	Gram_Positive_Competence	DNA Metabolism	
Competence protein CoiA	peg.1154	Gram_Positive_Competence	DNA Metabolism	
Oligoendopeptidase F (EC 3.4.24.-)	peg.1155			
"YjbH-like, GTP pyrophosphokinase domain"	peg.1156			
Hemoglobin-like protein HbO	peg.1157			
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	peg.1158			
Adenylate cyclase	peg.1159			rxn00065
GTP pyrophosphokinase (EC 2.7.6.5)	peg.1161			rxn00303
NAD kinase (EC 2.7.1.23)	peg.1162	NAD_and_NADP_cofactor_biosynthesis_global	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn10057|rxn10060|rxn10056|rxn10058|rxn10059|rxn00077
"Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type"	peg.1163	Ribosome_biogenesis_bacterial|rRNA_modification_Bacteria	Protein Metabolism|RNA Metabolism	
serine/threonine protein phosphatase	peg.1164			
Na+/H+ antiporter	peg.1165			
Thiaminase II (EC 3.5.99.2)	peg.1166	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01537
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	peg.1167|peg.3834	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02305
Glycine oxidase ThiO (EC 1.4.3.19)	peg.1168	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn04092|rxn00269
Sulfur carrier protein ThiS	peg.1169	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Thiazole biosynthesis protein ThiG	peg.1170	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Sulfur carrier protein adenylyltransferase ThiF	peg.1171	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Phosphomethylpyrimidine kinase (EC 2.7.4.7)	peg.1172|peg.3807	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn03108
Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	peg.1173	Fatty_Acid_Biosynthesis_FASII|mycolic_acid_synthesis	Fatty Acids and Lipids|Cell Wall and Capsule	rxn05323|rxn05448|rxn05441|rxn05328|rxn05445|rxn05446|rxn05435|rxn05326|rxn05437|rxn05324|rxn05464|rxn05322|rxn05439|rxn05443|rxn05434|rxn05442|rxn05436|rxn05447|rxn05438|rxn05327|rxn05450|rxn05440|rxn05444|rxn05433|rxn05325|rxn05449
Spore coat protein Z	peg.1175	Bsub-Spore-Coat	Cell Wall and Capsule	
Spore coat protein Y	peg.1176	Bsub-Spore-Coat	Cell Wall and Capsule	
Spore coat protein X	peg.1177	Bsub-Spore-Coat	Cell Wall and Capsule	
Spore coat protein W	peg.1178	Bsub-Spore-Coat	Cell Wall and Capsule	
Spore coat protein V	peg.1179	Bsub-Spore-Coat	Cell Wall and Capsule	
putative ATP-dependent DNA helicase YjcD	peg.1183	"DNA_repair,_bacterial_UvrD_and_related_helicases"	DNA Metabolism	
2'-5' RNA ligase (EC 6.5.1.-)	peg.1186			
Acetyl esterase (EC 3.1.1.-)	peg.1187			
Cystathionine gamma-synthase (EC 2.5.1.48)	peg.1188	Methionine_Biosynthesis	Amino Acids and Derivatives	rxn00740|rxn01816
Cystathionine beta-lyase (EC 4.4.1.8)	peg.1189	Methionine_Biosynthesis	Amino Acids and Derivatives	rxn00950|rxn00566
Ribosomal-protein-S5p-alanine acetyltransferase	peg.1190	Ribosome_biogenesis_bacterial	Protein Metabolism	
DUF819 domain-containing protein	peg.1191			
YJCO protein	peg.1194			
YJCR protein	peg.1197			
3-oxoacyl-[acyl-carrier protein] reductase paralog (EC 1.1.1.100)	peg.1199|peg.3295			
"Activator of the mannose operon (transcriptional antiterminator), BglG family"	peg.1201	Mannose_Metabolism	Carbohydrates	
"PTS system, mannose-specific IIA component (EC 2.7.1.69)"	peg.1202	Mannose_Metabolism|Sialic_Acid_Metabolism	Carbohydrates|Cell Wall and Capsule	rxn05610
"PTS system, mannose-specific IIB component (EC 2.7.1.69)"	peg.1202	Mannose_Metabolism|Sialic_Acid_Metabolism	Carbohydrates|Cell Wall and Capsule	rxn05610
"PTS system, mannose-specific IIC component (EC 2.7.1.69)"	peg.1202	Mannose_Metabolism|Sialic_Acid_Metabolism	Carbohydrates|Cell Wall and Capsule	rxn05610
Transcriptional regulator	peg.1207|peg.2714|peg.3526			
"Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB"	peg.1209|peg.1490			rxn08707
Spore coat protein T precursor	peg.1210	Bsub-Spore-Coat	Cell Wall and Capsule	
polysaccharide deacetylase family protein	peg.1211			
Formate dehydrogenase related protein	peg.1217|peg.2725			
MutT/nudix family protein	peg.1220			
putative cytochrome P450 hydroxylase	peg.1222|peg.1727|peg.2676|peg.3022			
amino acid ABC transporter ATP-binding protein	peg.1226			
Cupin domain-containing protein	peg.1228			
NADH dehydrogenase (EC 1.6.99.3)	peg.1230|peg.3216|peg.3226	Carboxysome|Respiratory_dehydrogenases_1	Carbohydrates|Respiration	rxn05747
Uronate isomerase (EC 5.3.1.12)	peg.1231	D-Galacturonate_Utilization|Entner-Doudoroff_Pathway	Carbohydrates	rxn01457|rxn01080
"Melibiose carrier protein, Na+/melibiose symporter"	peg.1232	Melibiose_Utilization	Carbohydrates	rxn05612
"(R)-2-hydroxyacid dehydrogenase, similar to L-sulfolactate dehydrogenase (EC 1.1.1.272)"	peg.1233	Glyoxylate_bypass	Carbohydrates	rxn00248
"Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-)"	peg.1234			
Mannonate dehydratase (EC 4.2.1.8)	peg.1235	D-Galacturonate_Utilization|Entner-Doudoroff_Pathway	Carbohydrates	rxn03885
D-mannonate oxidoreductase (EC 1.1.1.57)	peg.1236	D-Galacturonate_Utilization|Entner-Doudoroff_Pathway	Carbohydrates	rxn01775
Hexuronate transporter	peg.1237	Alginate_metabolism|D-Galacturonate_Utilization	Cell Wall and Capsule|Carbohydrates	rxn05574|rxn05673
Hexuronate utilization operon transcriptional repressor ExuR	peg.1238	D-Galacturonate_Utilization	Carbohydrates	
Altronate oxidoreductase (EC 1.1.1.58)	peg.1239	D-Galacturonate_Utilization	Carbohydrates	rxn01857
Altronate hydrolase (EC 4.2.1.7)	peg.1240	D-Galacturonate_Utilization|Entner-Doudoroff_Pathway	Carbohydrates	rxn01122
prevents sporulation by dephosphorylating Spo0F-P (and thus the phosphorelay)	peg.1244			
inhibitor of the activity of phosphatase RapA	peg.1245			
involved in defective prophage PBSX-mediated lysis	peg.1247			
DUF1696 domain-containing protein	peg.1248			
phage-related replication protein	peg.1249			
alternate gene name: ykxA PBSX prophage	peg.1251			
negative regulation of the defective prophage PBSX genes	peg.1252			
alternate gene name: ykxB PBSX prophage	peg.1253			
Phage-like element PBSX protein xkdC	peg.1254			
alternate gene name: ykxD PBSX prophage	peg.1255			
PBSX prophage	peg.1256|peg.1260|peg.1261|peg.1262|peg.1263|peg.1264|peg.1265|peg.1266|peg.1267|peg.1268|peg.1269|peg.1270|peg.1271|peg.1272|peg.1273|peg.1274|peg.1275|peg.1277|peg.1278|peg.1279			
required for expression of the PBSX late operon	peg.1257			
Phage terminase small subunit	peg.1258			
PBSX defective prophage terminase (large subunit)	peg.1259			
protein	peg.1276|peg.1930|peg.2098			
lytic exoenzyme associated with defective prophage PBSX	peg.1280			
involved in cell lysis upon induction of defective prophage PBSX	peg.1281|peg.1282			
major role in defective prophage PBSX-mediated lysis	peg.1283			
disruption blocks sporulation after septum formation	peg.1284			
alternate gene name: ykaC lethal when synthesized during vegetative growth in the absence of SpoIISB	peg.1285			
Probable low-affinity inorganic phosphate transporter	peg.1286			rxn05312
amino acid permease family protein	peg.1288|peg.3056			
putative integral membrane protein	peg.1290|peg.3361|peg.4055			
Glycosyltransferase	peg.1291|peg.3438|peg.3440			
"Serine protease, DegP/HtrA, do-like (EC 3.4.21.-)"	peg.1292|peg.4042	HtrA_and_Sec_secretion	Protein Metabolism	
"Pyrroline-5-carboxylate reductase (EC 1.5.1.2), ProG-like"	peg.1293	"Proline,_4-hydroxyproline_uptake_and_utilization|Proline_Synthesis"	Amino Acids and Derivatives	rxn00929|rxn00931
D-aminopeptidase	peg.1294			rxn07466
Dipeptide transport system permease protein dppB (TC 3.A.1.5.2)	peg.1295	ABC_transporter_dipeptide_(TC_3.A.1.5.2)	Membrane Transport	rxn05536|rxn05544|rxn05534|rxn05539|rxn05541|rxn05547|rxn05546|rxn05537|rxn05542|rxn05535|rxn05543|rxn05533|rxn05545|rxn05538|rxn05540
Dipeptide transport system permease protein dppC (TC 3.A.1.5.2)	peg.1296	ABC_transporter_dipeptide_(TC_3.A.1.5.2)	Membrane Transport	rxn05536|rxn05544|rxn05534|rxn05539|rxn05541|rxn05547|rxn05546|rxn05537|rxn05542|rxn05535|rxn05543|rxn05533|rxn05545|rxn05538|rxn05540
Dipeptide transport ATP-binding protein dppD (TC 3.A.1.5.2)	peg.1297	ABC_transporter_dipeptide_(TC_3.A.1.5.2)	Membrane Transport	rxn05536|rxn05544|rxn05534|rxn05539|rxn05541|rxn05547|rxn05546|rxn05537|rxn05542|rxn05535|rxn05543|rxn05533|rxn05545|rxn05538|rxn05540
"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)"	peg.1298	ABC_transporter_dipeptide_(TC_3.A.1.5.2)	Membrane Transport	rxn05536|rxn05544|rxn05534|rxn05539|rxn05541|rxn05547|rxn05546|rxn05537|rxn05542|rxn05535|rxn05543|rxn05533|rxn05545|rxn05538|rxn05540
Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13)	peg.1299			
L-alanine-DL-glutamate epimerase	peg.1300			rxn08100
NLP/P60 family protein	peg.1301			
6-phosphogluconolactonase (EC 3.1.1.31)	peg.1303	Entner-Doudoroff_Pathway|Formaldehyde_assimilation:_Ribulose_monophosphate_pathway|Pentose_phosphate_pathway	Carbohydrates	rxn01476
"NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)"	peg.1304			rxn01819
Acyl-CoA hydrolase (EC 3.1.2.20)	peg.1305			
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	peg.1306			rxn03991|rxn03990
Quaternary ammonium compound-resistance protein sugE	peg.1311|peg.1312|peg.3455|peg.3456			
Formyltetrahydrofolate deformylase (EC 3.5.1.10)	peg.1313	5-FCL-like_protein|One-carbon_metabolism_by_tetrahydropterines	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Carbohydrates"	rxn00691
Glutamate 5-kinase (EC 2.7.2.11)	peg.1314|peg.1851	"Iojap|Proline,_4-hydroxyproline_uptake_and_utilization|Proline_Synthesis"	Protein Metabolism|Amino Acids and Derivatives	rxn00179
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	peg.1315	"Iojap|Proline,_4-hydroxyproline_uptake_and_utilization|Proline_Synthesis|YgfZ"	"Protein Metabolism|Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02373
Organic hydroperoxide resistance protein	peg.1316|peg.1318	Oxidative_stress	Stress Response	
Guanine deaminase (EC 3.5.4.3)	peg.1319	Purine_conversions	Nucleosides and Nucleotides	rxn01225
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	peg.1320	Methionine_Biosynthesis	Amino Acids and Derivatives	rxn00693
Major intracellular serine protease precursor (EC 3.4.21.-)	peg.1321			
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	peg.1323	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05177
Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	peg.1324			rxn05177
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	peg.1325	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05177
Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine	peg.1326	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05177
YKOI	peg.1329			
YKOJ	peg.1330			
Magnesium transporter	peg.1332			rxn05616
"global nitrogen regulation (positive regulation of nrgAB, nasB, gabP, ureABC"	peg.1333			
negative regulation of glnRA)	peg.1333			
"1,2-diacylglycerol 3-glucosyltransferase (EC 2.4.1.157)"	peg.1337			rxn10283|rxn10286|rxn10288|rxn10281|rxn10280|rxn10285|rxn10287|rxn10282|rxn10284
phosphoesterase	peg.1339			
alternate gene name: ykoR	peg.1340			
"ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD"	peg.1342	Nonhomologous_End-Joining_in_Bacteria	DNA Metabolism	rxn05294
Ku domain protein	peg.1343	Nonhomologous_End-Joining_in_Bacteria	DNA Metabolism	
Predicted signal transduction protein	peg.1344	Motility_of_Campylobacter	Motility and Chemotaxis	
"membrane protein, TerC family"	peg.1346			
RNA polymerase sigma-54 factor RpoN	peg.1347|peg.3426	"Flagellum|Motility_of_Campylobacter|Transcription_initiation,_bacterial_sigma_factors"	Motility and Chemotaxis|RNA Metabolism	
"Small acid-soluble spore protein, alpha/beta family, SASP_6"	peg.1349	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	
heat shock protein	peg.1351			
"Potassium uptake protein, integral membrane component, KtrD"	peg.1352			rxn05595
Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)	peg.1357	Methionine_Salvage	Amino Acids and Derivatives	rxn03057
5-methylthioribose kinase (EC 2.7.1.100)	peg.1358	Methionine_Salvage	Amino Acids and Derivatives	rxn02894
Aliphatic amidase amiE (EC 3.5.1.4)	peg.1359			rxn02222|rxn02275|rxn01843|rxn03869|rxn00231|rxn03839
Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase	peg.1360	Methionine_Salvage	Amino Acids and Derivatives	rxn05108
"2,3-diketo-5-methylthiopentyl-1-phosphate enolase"	peg.1361	Calvin-Benson_cycle|Methionine_Salvage	Carbohydrates|Amino Acids and Derivatives	rxn05105
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase	peg.1362	Methionine_Salvage	Amino Acids and Derivatives	rxn05106
Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)	peg.1363	Methionine_Salvage	Amino Acids and Derivatives	rxn05104
"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)"	peg.1364	Methionine_Salvage	Amino Acids and Derivatives	rxn05092|rxn05091
DUF1232 domain-containing protein	peg.1365			
"Spo0E regulatory protein, specific dephosphorylation of Spo0A-P (stage 0 sporulation)"	peg.1366			
small membrane protein	peg.1367			
sensor histidine kinase KinD	peg.1368			
Flagellar motor rotation protein MotB	peg.1370|peg.2975	Flagellum|Motility_of_Campylobacter	Motility and Chemotaxis	
Flagellar motor rotation protein MotA	peg.1371|peg.2976	Flagellum|Motility_of_Campylobacter	Motility and Chemotaxis	
ATP-dependent Clp protease-like	peg.1372			
Queuosine Biosynthesis QueC ATPase	peg.1374	Queuosine-Archaeosine_Biosynthesis|YgfZ|tRNA_modification_Archaea_Henri|tRNA_modification_Bacteria	"RNA Metabolism|Cofactors, Vitamins, Prosthetic Groups, Pigments"	
"Queuosine biosynthesis QueD, PTPS-I"	peg.1375	Methanopterin_biosynthesis2|Queuosine-Archaeosine_Biosynthesis|tRNA_modification_Bacteria	"Cofactors, Vitamins, Prosthetic Groups, Pigments|RNA Metabolism"	
Queuosine Biosynthesis QueE Radical SAM	peg.1376	Queuosine-Archaeosine_Biosynthesis|tRNA_modification_Archaea_Henri|tRNA_modification_Bacteria	RNA Metabolism	
NADPH dependent preQ0 reductase	peg.1377	Queuosine-Archaeosine_Biosynthesis|tRNA_modification_Archaea_Henri|tRNA_modification_Bacteria	RNA Metabolism	
"oxidoreductase, short-chain dehydrogenase-reductase family (putativesecrete)"	peg.1379			
"Uncharacterized protein YkvT, NOT involved in spore germination"	peg.1384			
Stage V sporulation protein B	peg.1385|peg.2770			
Sporulation thiol-disulfide oxidoreductase StoA precursor (Stage IV sporulation protein H)	peg.1386			
Copper-translocating P-type ATPase (EC 3.6.3.4)	peg.1387|peg.3355|peg.3356	Terminal_cytochrome_C_oxidases|Terminal_cytochrome_C_oxidases_copy	Respiration	rxn05150|rxn05516|rxn10343|rxn10344|rxn05528
"Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5)"	peg.1387|peg.3355			rxn05150|rxn05516|rxn10343|rxn10344
Xaa-Pro dipeptidase (EC 3.4.13.9)	peg.1388			
"sugar-binding transcriptional regulator, LacI family"	peg.1389|peg.4093			
Transcription antiterminator GlcT	peg.1390			
"PTS system, glucose-specific IIA component (EC 2.7.1.69)"	peg.1391|peg.2228	Trehalose_Uptake_and_Utilization	Carbohydrates	rxn05226
"PTS system, glucose-specific IIB component (EC 2.7.1.69)"	peg.1391	Trehalose_Uptake_and_Utilization	Carbohydrates	rxn05226
"PTS system, glucose-specific IIC component (EC 2.7.1.69)"	peg.1391	Trehalose_Uptake_and_Utilization	Carbohydrates	rxn05226
Phosphocarrier protein of PTS system	peg.1392	Fructose_and_Mannose_Inducible_PTS|Galactose-inducible_PTS|Mannitol_Utilization|Sucrose-specific_PTS	Membrane Transport|Carbohydrates	rxn05569|rxn05226|rxn05560|rxn05485|rxn05647|rxn02005|rxn05610|rxn05655|rxn05617|rxn05607|rxn05501
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	peg.1393	Fructose_and_Mannose_Inducible_PTS|Galactose-inducible_PTS|Mannitol_Utilization|Sucrose-specific_PTS	Membrane Transport|Carbohydrates	rxn05569|rxn05226|rxn05485|rxn05647|rxn02005|rxn05610|rxn05655|rxn05617|rxn05607|rxn05501
regulation of the spore photoproduct lyase operon (splAB)	peg.1394			
Spore photoproduct lyase (EC 4.1.99.-)	peg.1395	YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn04454|rxn04712
"chemotaxis deficiency toward cysteine, proline, threonine, glycine, serine, lysine, valine and arginine"	peg.1397			
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	peg.1398	"D-galactarate,_D-glucarate_and_D-glycerate_catabolism|Glycerate_metabolism|Photorespiration_(oxidative_C2_cycle)"	Carbohydrates	rxn01281|rxn01280
penicillin-binding protein	peg.1400			
Sporulation kinase A (EC 2.7.13.3)	peg.1401			
"N-acetyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.-)"	peg.1402	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	rxn03086
Chemotaxis protein CheV (EC 2.7.3.-)	peg.1403	Motility_of_Campylobacter	Motility and Chemotaxis	
Protein erfK/srfK precursor	peg.1406|peg.2398			
Ser/Thr protein phosphatase family protein	peg.1407			
"2,4-dienoyl-CoA reductase, mitochondrial precursor (EC 1.3.1.34)"	peg.1408			
putative peptidoglycan binding domain protein	peg.1409			
EAL-domain protein	peg.1411			
DUF458 domain-containing protein	peg.1413			
Flavodoxin	peg.1417|peg.1419	Flavodoxin	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)"	peg.1420	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	rxn03030
"N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)"	peg.1421	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	rxn01972
Alkyl hydroperoxide reductase subunit C-like protein	peg.1424	Oxidative_stress|Rubrerythrin	Stress Response	
Sporulation protein Cse15	peg.1427			
molybdopterin-guanine dinucleotide biosynthesis protein A	peg.1428			
Molybdopterin biosynthesis protein B	peg.1429	Molybdopterin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Molybdopterin biosynthesis protein A	peg.1430	Molybdopterin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Molybdopterin-guanine dinucleotide biosynthesis protein B	peg.1431	Molybdopterin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Molybdenum cofactor biosynthesis protein E	peg.1432	Molybdopterin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Molybdopterin converting factor subunit 2	peg.1432			
Molybdenum cofactor biosynthesis protein D	peg.1433	Molybdopterin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Molybdopterin converting factor subunit 1	peg.1433			
periplasmic component of efflux system	peg.1437|peg.3335			
"Transcriptional repressor of the fructose operon, DeoR family"	peg.1440	Fructose_utilization	Carbohydrates	
1-phosphofructokinase (EC 2.7.1.56)	peg.1441	Fructose_utilization	Carbohydrates	rxn02314|rxn01492
Tagatose-6-phosphate kinase (EC 2.7.1.144)	peg.1441	D-Tagatose_and_Galactitol_Utilization|Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	rxn02314|rxn01492
"PTS system, fructose-specific IIA component (EC 2.7.1.69)"	peg.1442|peg.2710	Fructose_utilization	Carbohydrates	rxn05560
"PTS system, fructose-specific IIB component (EC 2.7.1.69)"	peg.1442|peg.2709	Fructose_utilization	Carbohydrates	rxn05560
"PTS system, fructose-specific IIC component (EC 2.7.1.69)"	peg.1442|peg.2708	Fructose_utilization	Carbohydrates	rxn05560
2-dehydropantoate 2-reductase (EC 1.1.1.169)	peg.1446|peg.1513	Coenzyme_A_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01790
"Aminopeptidase S (Leu, Val, Phe, Tyr preference) (EC 3.4.11.-)"	peg.1447	Protein_degradation	Protein Metabolism	
Cell-shape determining protein MreBH	peg.1449	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Putative transition state regulator Abh	peg.1450	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	
involved in the initiation of sporulation (phosphorelay-independent)	peg.1451			
btrG family protein	peg.1452			
Trk system potassium uptake protein trkA	peg.1453			rxn05595
adenine deaminase	peg.1454			rxn00926
"Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa analog"	peg.1455|peg.1681			
Hydrolase (HAD superfamily) in cluster with DUF1447	peg.1457			
Peptide deformylase (EC 3.5.1.88)	peg.1458|peg.1574	Dehydrogenase_complexes|Translation_factors_bacterial	Carbohydrates|Protein Metabolism	rxn00375|rxn00376|rxn00455
Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1)	peg.1460	"Dehydrogenase_complexes|Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"	Carbohydrates	rxn00011|rxn02342
Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1)	peg.1461	"Dehydrogenase_complexes|Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"	Carbohydrates	rxn00011|rxn02342
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	peg.1462	"Dehydrogenase_complexes|Lipoic_acid_metabolism|Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"	"Carbohydrates|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01871
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	peg.1463	"Dehydrogenase_complexes|Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate|TCA_Cycle"	Carbohydrates	rxn01241
small peptidoglycan-associated lipoprotein	peg.1464			
Myo-inositol-1(or 4)-monophosphatase (EC 3.1.3.25)	peg.1469	Inositol_catabolism	Carbohydrates	rxn00883|rxn00881|rxn00882
O-Methyltransferase involved in polyketide biosynthesis	peg.1471			
extracellular neutral metalloprotease	peg.1472			
RNA polymerase ECF-type sigma factor	peg.1475			
GTP-binding protein TypA/BipA	peg.1479	Universal_GTPases	Protein Metabolism	
Predicted ATPase related to phosphate starvation-inducible protein PhoH	peg.1483			
Cell division protein FtsW	peg.1487	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Pyruvate carboxyl transferase (EC 6.4.1.1)	peg.1488	"Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	rxn00250
"Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA"	peg.1489			rxn10048
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)	peg.1491	Terminal_cytochrome_C_oxidases|Terminal_cytochrome_C_oxidases_copy	Respiration	rxn10043
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)	peg.1492	Terminal_cytochrome_C_oxidases|Terminal_cytochrome_C_oxidases_copy	Respiration	rxn10043
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)	peg.1493	Terminal_cytochrome_C_oxidases|Terminal_cytochrome_C_oxidases_copy	Respiration	rxn10043
"Cytochrome c oxidase, subunit IV (EC 1.9.3.1)"	peg.1494	Terminal_cytochrome_C_oxidases|Terminal_cytochrome_C_oxidases_copy	Respiration	rxn10043
CtaG protein	peg.1495			
CBS domain protein	peg.1497			
Allergen V5/Tpx-1 related	peg.1498			
ComK regulator	peg.1501			
Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)	peg.1503	rRNA_modification_Bacteria	RNA Metabolism	
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	peg.1504	Coenzyme_A_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02175
FIGfam003972: membrane protein	peg.1505			
Serine protease (EC 3.4.21.-)	peg.1506			
Lon-like protease with PDZ domain	peg.1507	Proteasome_bacterial	Protein Metabolism	
FIG007079: UPF0348 protein family	peg.1508			
YlbN-like protein	peg.1509			
LSU ribosomal protein L32p	peg.1510	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
Prespore specific transcriptional activator RsfA	peg.1511|peg.3768			
Uncharacterized N-acetyltransferase BT9727_3663 (EC 2.3.1.-)	peg.1512			
Cell division protein MraZ	peg.1515	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
S-adenosyl-methyltransferase MraW (EC 2.1.1.-)	peg.1516	Bacterial_Cell_Division	Cell Division and Cell Cycle	
Cell division protein FtsL	peg.1517	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Penicillin-binding protein 2B	peg.1518			
Stage V sporulation protein D (Sporulation-specific penicillin-binding protein)	peg.1519			
"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)"	peg.1520	Methicillin_resistance_in_Staphylococci	Virulence	rxn02011
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	peg.1521			rxn03904
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	peg.1522			rxn02008
Stage V sporulation protein E	peg.1523			
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	peg.1524			rxn03408
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158)	peg.1525			rxn02285
Cell division protein ftsQ	peg.1526	Bacterial_Cell_Division	Cell Division and Cell Cycle	
Division initiation protein	peg.1527			
YLXX protein	peg.1528			
small basic protein	peg.1529			
Cell division protein FtsA	peg.1530	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Cell division protein FtsZ (EC 3.4.24.-)	peg.1531	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
bacillopeptidase F	peg.1532			
Sporulation sigma-E factor processing peptidase (SpoIIGA)	peg.1533			
RNA polymerase sporulation specific sigma factor SigE	peg.1534	"Transcription_initiation,_bacterial_sigma_factors"	RNA Metabolism	
RNA polymerase sporulation specific sigma factor SigG	peg.1535	"Transcription_initiation,_bacterial_sigma_factors"	RNA Metabolism	
ABC transporter ATP-binding protein	peg.1536			
Acetylornithine deacetylase (EC 3.5.1.16)	peg.1537|peg.1975	Arginine_Biosynthesis|Arginine_Biosynthesis_extended	Amino Acids and Derivatives	rxn00469
YLMC protein	peg.1538			
COG1496: Uncharacterized conserved protein	peg.1539	tRNA_modification_Bacteria	RNA Metabolism	
FIG001960: FtsZ-interacting protein related to cell division	peg.1541			
FIG013736: cell division protein (putative)	peg.1542			
Cell division initiation protein DivIVA	peg.1544	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Isoleucyl-tRNA synthetase (EC 6.1.1.5)	peg.1545	tRNA_aminoacylation	Protein Metabolism	rxn05296
Lipoprotein signal peptidase (EC 3.4.23.36)	peg.1547	Lipoprotein_Biosynthesis|Signal_peptidase	Protein Metabolism	
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)	peg.1548	Ribosome_biogenesis_bacterial|rRNA_modification_Bacteria	Protein Metabolism|RNA Metabolism	
Pyrimidine operon regulatory protein PyrR	peg.1549			rxn00711
Uracil phosphoribosyltransferase (EC 2.4.2.9)	peg.1549	pyrimidine_conversions	Nucleosides and Nucleotides	rxn00711
Uracil permease	peg.1550			rxn05197
Aspartate carbamoyltransferase (EC 2.1.3.2)	peg.1551	YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01018
Dihydroorotase (EC 3.5.2.3)	peg.1552	YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01465
Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)	peg.1555	YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01360
"Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)"	peg.1556	YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01360
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	peg.1557			rxn00710
Orotate phosphoribosyltransferase (EC 2.4.2.10)	peg.1558	Iojap|YgfZ	"Protein Metabolism|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01362
"Sulfate permease, Pit-type"	peg.1560	Inorganic_Sulfur_Assimilation	Sulfur Metabolism	rxn05651
Sirohydrochlorin ferrochelatase (EC 4.99.1.4)	peg.1564	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02056
Precorrin-2 oxidase (EC 1.3.1.76)	peg.1565	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02774
Siroheme synthase	peg.1565			rxn02774
Fibronectin/fibrinogen-binding protein	peg.1566	Adhesion_of_Campylobacter	Virulence	
"cation-transporting ATPase, E1-E2 family"	peg.1567			rxn05513|rxn05174
Protein YicC	peg.1568			
Guanylate kinase (EC 2.7.4.8)	peg.1570	MLST|Purine_conversions	Virulence|Nucleosides and Nucleotides	rxn09562|rxn01509|rxn00239
DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	peg.1571	RNA_polymerase_bacterial	RNA Metabolism	
Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	peg.1572	Coenzyme_A_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02341|rxn09177
Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	peg.1572	Coenzyme_A_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02341|rxn09177
Helicase PriA essential for oriC/DnaA-independent DNA replication	peg.1573	DNA-replication	DNA Metabolism	rxn05294
Methionyl-tRNA formyltransferase (EC 2.1.2.9)	peg.1575	Folate_Biosynthesis|Translation_factors_bacterial	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Protein Metabolism"	rxn05296
Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)	peg.1576	rRNA_modification_Bacteria	RNA Metabolism	
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	peg.1577	rRNA_modification_Bacteria	RNA Metabolism	
"Protein serine/threonine phosphatase PrpC, regulation of stationary phase"	peg.1578			
"Serine/threonine protein kinase PrkC, regulator of stationary phase"	peg.1579			
Ribosome small subunit-stimulated GTPase EngC	peg.1580	Universal_GTPases	Protein Metabolism	
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	peg.1581	2-phosphoglycolate_salvage|Calvin-Benson_cycle|Pentose_phosphate_pathway	DNA Metabolism|Carbohydrates	rxn01116
Thiamin pyrophosphokinase (EC 2.7.6.2)	peg.1582	PnuC-like_transporters|Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00440
Stage V sporulation protein required for normal spore cortex and coat synthesis (SpoVM)	peg.1583			
LSU ribosomal protein L28p	peg.1584	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
FIG001802: Putative alkaline-shock protein	peg.1585			
Dihydroxyacetone kinase family protein	peg.1586	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids and Lipids	
"L-serine dehydratase, beta subunit (EC 4.3.1.17)"	peg.1587	Glycine_and_Serine_Utilization|Pyruvate_Alanine_Serine_Interconversions	Amino Acids and Derivatives|Carbohydrates	rxn00165
"L-serine dehydratase, alpha subunit (EC 4.3.1.17)"	peg.1588	Glycine_and_Serine_Utilization|Pyruvate_Alanine_Serine_Interconversions	Amino Acids and Derivatives|Carbohydrates	rxn00165
ATP-dependent DNA helicase RecG (EC 3.6.1.-)	peg.1589	DNA-replication	DNA Metabolism	
Transcription factor fapR	peg.1590			
Phosphate:acyl-ACP acyltransferase PlsX	peg.1591	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids and Lipids	rxn10208|rxn10206|rxn10210|rxn10203|rxn10209|rxn10202|rxn10207|rxn10205|rxn10204
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	peg.1592|peg.1714	Fatty_Acid_Biosynthesis_FASII|mycolic_acid_synthesis	Fatty Acids and Lipids|Cell Wall and Capsule	rxn05408|rxn05383|rxn05456|rxn05455|rxn05458|rxn05453|rxn05451|rxn05358|rxn05457|rxn05465|rxn05452|rxn05454|rxn05459
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	peg.1593|peg.2945|peg.3296	Fatty_Acid_Biosynthesis_FASII|mycolic_acid_synthesis	Fatty Acids and Lipids|Cell Wall and Capsule	rxn05422|rxn05426|rxn05364|rxn05372|rxn05430|rxn05341|rxn05410|rxn05376|rxn05342|rxn05337|rxn05385|rxn05339|rxn05401|rxn05338|rxn05397|rxn05360|rxn05340|rxn05414|rxn05461|rxn05405|rxn05368|rxn05418|rxn05393|rxn05389|rxn05380|rxn05336
Acyl carrier protein	peg.1594	Fatty_Acid_Biosynthesis_FASII|Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria|mycolic_acid_synthesis	Fatty Acids and Lipids|Cell Wall and Capsule	rxn06023
Ribonuclease III (EC 3.1.26.3)	peg.1595	"RNA_processing_and_degradation,_bacterial|Two_cell_division_clusters_relating_to_chromosome_partitioning"	RNA Metabolism|Cell Division and Cell Cycle	rxn05295
Chromosome partition protein smc	peg.1596	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	rxn05294
Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)	peg.1597	Bacterial_Cell_Division|General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)|Two_cell_division_clusters_relating_to_chromosome_partitioning|Universal_GTPases	Cell Division and Cell Cycle|Protein Metabolism	
Signal recognition particle associated protein	peg.1599	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	
"Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)"	peg.1600	General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)|Two_cell_division_clusters_relating_to_chromosome_partitioning|Universal_GTPases	Protein Metabolism|Cell Division and Cell Cycle	
SSU ribosomal protein S16p	peg.1601	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
KH domain protein	peg.1602			
16S rRNA processing protein RimM	peg.1604	Ribosome_biogenesis_bacterial	Protein Metabolism	
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	peg.1605	Ribosome_biogenesis_bacterial|Wyeosine-MimG_Biosynthesis|tRNA_modification_Archaea|tRNA_modification_Archaea_Henri|tRNA_modification_Bacteria|tRNA_modification_yeast_cytoplasmic|tRNA_modification_yeast_mitochondrial	Protein Metabolism|RNA Metabolism	rxn05295
LSU ribosomal protein L19p	peg.1606	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)	peg.1607	Universal_GTPases	Protein Metabolism	
Ribonuclease HII (EC 3.1.26.4)	peg.1608	"DNA_replication,_archaeal|Ribonuclease_H"	DNA Metabolism|RNA Metabolism	
flagellar biosynthesis	peg.1610			
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	peg.1611	Dehydrogenase_complexes|Serine-glyoxylate_cycle|TCA_Cycle	Carbohydrates	rxn00285
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	peg.1612	Dehydrogenase_complexes|Serine-glyoxylate_cycle|TCA_Cycle	Carbohydrates	rxn00285
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	peg.1613			
DNA topoisomerase I (EC 5.99.1.2)	peg.1614	"DNA_topoisomerases,_Type_I,_ATP-independent|pVir_Plasmid_of_Campylobacter"	DNA Metabolism|Virulence	rxn05294
tRNA:m(5)U-54 MTase gid	peg.1615	rRNA_modification_Bacteria|tRNA_modification_Bacteria	RNA Metabolism	
Site-specific tyrosine recombinase	peg.1616	Proteasome_bacterial	Protein Metabolism	
ATP-dependent protease HslV (EC 3.4.25.-)	peg.1617	"Proteasome_bacterial|Proteolysis_in_bacteria,_ATP-dependent"	Protein Metabolism	
ATP-dependent hsl protease ATP-binding subunit HslU	peg.1618	"Proteasome_bacterial|Proteolysis_in_bacteria,_ATP-dependent"	Protein Metabolism	
GTP-sensing transcriptional pleiotropic repressor codY	peg.1619			
Flagellar basal-body rod protein flgB	peg.1620	Flagellum|Flagellum_in_Campylobacter	Motility and Chemotaxis	
Flagellar basal-body rod protein flgC	peg.1621	Flagellum|Flagellum_in_Campylobacter	Motility and Chemotaxis	
Flagellar hook-basal body complex protein fliE	peg.1622	Flagellum	Motility and Chemotaxis	
Flagellar M-ring protein fliF	peg.1623	Flagellum	Motility and Chemotaxis	
Flagellar motor switch protein fliG	peg.1624	Flagellum	Motility and Chemotaxis	
Flagellar assembly protein fliH	peg.1625	Flagellum	Motility and Chemotaxis	
Flagellum-specific ATP synthase FliI	peg.1626	Flagellum|Motility_of_Campylobacter	Motility and Chemotaxis	
Flagellar protein fliJ	peg.1627	Flagellum	Motility and Chemotaxis	
Flagellar protein flbB	peg.1628	Flagellum	Motility and Chemotaxis	
Flagellar hook-length control protein fliK	peg.1629	Flagellum	Motility and Chemotaxis	
Flagellar basal-body rod modification protein FlgD	peg.1630	Flagellum|Motility_of_Campylobacter	Motility and Chemotaxis	
Flagellar basal-body rod protein flgG	peg.1631|peg.3646	Flagellum	Motility and Chemotaxis	
Flagellar protein flbD	peg.1632	Flagellum	Motility and Chemotaxis	
Flagellar biosynthesis protein fliL	peg.1633	Flagellum	Motility and Chemotaxis	
Flagellar motor switch protein FliM	peg.1634	Flagellum|Motility_of_Campylobacter	Motility and Chemotaxis	
Flagellar motor switch protein FliN	peg.1635	Flagellum|Motility_of_Campylobacter	Motility and Chemotaxis	
Chemotaxis protein cheY homolog	peg.1636			
Flagellar biosynthesis protein fliZ	peg.1637	Flagellum	Motility and Chemotaxis	
Flagellar biosynthesis protein fliP	peg.1638	Flagellum	Motility and Chemotaxis	
Flagellar biosynthesis protein fliQ	peg.1639	Flagellum	Motility and Chemotaxis	
Flagellar biosynthesis protein FliR	peg.1640	Flagellum|Motility_of_Campylobacter	Motility and Chemotaxis	
Flagellar biosynthesis protein FlhB	peg.1641	Flagellum|Motility_of_Campylobacter	Motility and Chemotaxis	
Flagellar biosynthesis protein FlhA	peg.1642	Flagellum|Motility_of_Campylobacter	Motility and Chemotaxis	
Flagellar biosynthesis protein FlhF	peg.1643	Flagellum|Motility_of_Campylobacter	Motility and Chemotaxis	
Flagellar synthesis regulator FleN	peg.1644	Flagellum|Motility_of_Campylobacter	Motility and Chemotaxis	
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61)	peg.1645			
Signal transduction histidine kinase CheA (EC 2.7.3.-)	peg.1646			
Positive regulator of CheA protein activity (CheW)	peg.1647			
Chemotaxis protein CheC -- inhibitor of MCP methylation	peg.1648			
Chemotaxis protein CheD	peg.1649			
RNA polymerase sigma factor for flagellar operon	peg.1650	"Flagellum|Motility_of_Campylobacter|Transcription_initiation,_bacterial_sigma_factors"	Motility and Chemotaxis|RNA Metabolism	
SSU ribosomal protein S2p (SAe)	peg.1652	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
Translation elongation factor Ts	peg.1653	Translation_factors_bacterial	Protein Metabolism	
Uridylate kinase (EC 2.7.4.-)	peg.1654			rxn00119
Ribosome recycling factor	peg.1655	Translation_factors_bacterial	Protein Metabolism	
Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31)	peg.1656	Isoprenoid_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn04308
Phosphatidate cytidylyltransferase (EC 2.7.7.41)	peg.1657	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria|Iojap	Fatty Acids and Lipids|Protein Metabolism	rxn10225|rxn08311|rxn08307|rxn10223|rxn10221|rxn08309|rxn10224|rxn10222|rxn10220
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	peg.1658	Isoprenoid_Biosynthesis|Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis|polyprenyl_synthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn03958
Membrane-associated zinc metalloprotease	peg.1659	Periplasmic_Stress_Response	Stress Response	
Prolyl-tRNA synthetase (EC 6.1.1.15)	peg.1660	"Proline,_4-hydroxyproline_uptake_and_utilization|tRNA_aminoacylation"	Amino Acids and Derivatives|Protein Metabolism	rxn05296
DNA polymerase III alpha subunit (EC 2.7.7.7)	peg.1661|peg.2926	DNA-replication	DNA Metabolism	rxn05294
COG0779: clustered with transcription termination protein NusA	peg.1662	Transcription_factors_bacterial	RNA Metabolism	
Transcription termination protein NusA	peg.1663	Transcription_factors_bacterial	RNA Metabolism	rxn05295
COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination	peg.1664	Transcription_factors_bacterial	RNA Metabolism	
ribosomal protein L7Ae family protein	peg.1665	Transcription_factors_bacterial	RNA Metabolism	
Translation initiation factor 2	peg.1666	Translation_factors_bacterial|Translation_initiation_factors_eukaryotic_and_archaeal|Universal_GTPases	Protein Metabolism	
YlxP-like protein	peg.1667			
Ribosome-binding factor A	peg.1668	Translation_factors_bacterial	Protein Metabolism	
tRNA pseudouridine synthase B (EC 4.2.1.70)	peg.1669	tRNA_modification_Bacteria	RNA Metabolism	
FMN adenylyltransferase (EC 2.7.7.2)	peg.1670	"Riboflavin,_FMN_and_FAD_metabolism"	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00122|rxn00392
Riboflavin kinase (EC 2.7.1.26)	peg.1670|peg.2933	"Riboflavin,_FMN_and_FAD_metabolism"	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00122|rxn00392
SSU ribosomal protein S15p (S13e)	peg.1671	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	peg.1672	Polyadenylation_bacterial	RNA Metabolism	
"FIG030745: polysaccharide deacetylase, putative"	peg.1673			
"FIG017807: peptidase, M16 family"	peg.1674			
PRC-barrel domain superfamily	peg.1675			
Dipicolinate synthase subunit A (EC 4.2.1.52)	peg.1676	Dipicolinate_Synthesis	Dormancy and Sporulation	rxn10061
Dipicolinate synthase subunit B	peg.1677	Dipicolinate_Synthesis	Dormancy and Sporulation	rxn10061
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	peg.1678	Lysine_Biosynthesis_DAP_Pathway|Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	rxn01643
Dihydrodipicolinate synthase (EC 4.2.1.52)	peg.1680	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	rxn01644
Translocation-enhancing protein TepA	peg.1682			
Cell division protein FtsK	peg.1683|peg.2983	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Transcriptional regulator in cluster with Zn-dependent hydrolase	peg.1684			
FIG001621: Zinc protease	peg.1687|peg.1688			
"FIG009210: peptidase, M16 family"	peg.1689			
3-oxoacyl-[acyl-carrier protein] reductase paralog (EC 1.1.1.100) in cluster with unspecified monosaccharide transporter	peg.1690			
YMFJ protein	peg.1691			
ACT domain protein	peg.1692			
Transcriptional regulator in cluster with unspecified monosaccharide ABC transport system	peg.1694			
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	peg.1695	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids and Lipids	rxn09113|rxn10259|rxn10264|rxn10261|rxn09111|rxn10263|rxn09109|rxn10262|rxn10260
Competence/damage-inducible protein CinA	peg.1696			
RecA protein	peg.1697	"DNA-replication|DNA_repair,_bacterial|DNA_repair,_bacterial_RecFOR_pathway"	DNA Metabolism	
peptidoglycan biosynthesis	peg.1698			rxn10199
FIG002344: Hydrolase (HAD superfamily)	peg.1699			
Phosphoesterase family protein	peg.1700			
Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS)	peg.1701			
L-threonine 3-dehydrogenase (EC 1.1.1.103)	peg.1702	Glycine_Biosynthesis|Threonine_degradation	Amino Acids and Derivatives	rxn01068
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	peg.1703	Glycine_Biosynthesis|Glycine_and_Serine_Utilization|Threonine_degradation	Amino Acids and Derivatives	rxn00274
tRNA-i(6)A37 methylthiotransferase	peg.1704	YgfZ|tRNA_modification_Archaea|tRNA_modification_Bacteria|tRNA_processing	"Cofactors, Vitamins, Prosthetic Groups, Pigments|RNA Metabolism"	
YMCA protein	peg.1705			
Outer spore coat protein E	peg.1706	Bsub-Spore-Coat	Cell Wall and Capsule	
DNA mismatch repair protein MutS	peg.1707	"DNA_repair,_bacterial_MutL-MutS_system"	DNA Metabolism	
DNA mismatch repair protein MutL	peg.1708	"DNA_repair,_bacterial_MutL-MutS_system"	DNA Metabolism	
regulation of the polyketide synthase operon (pks)	peg.1710			
Metallo-beta-lactamase family protein	peg.1711			rxn01274
Malonyl CoA-acyl carrier protein transacylase paralog (EC 2.3.1.39) involved in in polyketide synthesis	peg.1712			
involved in polyketide synthesis	peg.1713|peg.1718			
Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)	peg.1714	Fatty_Acid_Biosynthesis_FASII	Fatty Acids and Lipids	
Acyl carrier protein AcpK involved in in polyketide synthesis	peg.1715			
3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)	peg.1716			
Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10)	peg.1717	Archaeal_lipids|Isoprenoid_Biosynthesis|Ketoisovalerate_oxidoreductase|Leucine_Degradation_and_HMG-CoA_Metabolism|Mevalonate_Branch_of_Isoprenoid_Biosynthesis	"Fatty Acids and Lipids|Cofactors, Vitamins, Prosthetic Groups, Pigments|Amino Acids and Derivatives"	rxn01454
Enoyl-CoA hydratase (EC 4.2.1.17)	peg.1719|peg.2857	Acetyl-CoA_fermentation_to_Butyrate|Butanol_Biosynthesis|Isoleucine_degradation|Valine_degradation|n-Phenylalkanoic_acid_degradation	Carbohydrates|Amino Acids and Derivatives|Metabolism of Aromatic Compounds	rxn02949|rxn02167|rxn03241|rxn03250|rxn03245|rxn02934|rxn03240|rxn02911|rxn03247
polyketide synthase of type I	peg.1721|peg.1722|peg.1725			
polyketide synthase	peg.1723|peg.1724|peg.1726			
alkaline serine protease	peg.1730			
phage-related protein	peg.1731|peg.1786|peg.2051|peg.2631			
YMAD protein	peg.1732			
Multidrug resistance protein ebrB	peg.1733			
Multidrug resistance protein ebrA	peg.1734			
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8)	peg.1737	Iojap|tRNA_modification_Bacteria|tRNA_modification_yeast_cytoplasmic|tRNA_modification_yeast_mitochondrial|tRNA_processing	Protein Metabolism|RNA Metabolism	
RNA-binding protein Hfq	peg.1738	Polyadenylation_bacterial	RNA Metabolism	
Ribonucleotide reduction protein NrdI	peg.1741|peg.2012			rxn06076|rxn05233|rxn05231|rxn06075
"Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)"	peg.1742|peg.2010|peg.2011			rxn06076|rxn05233|rxn05231|rxn06075
"Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)"	peg.1743|peg.2009			rxn06076|rxn05233|rxn05231|rxn06075
sporulation-specific mother cell wall hydrolase	peg.1745			
Stage V sporulation protein whose disruption leads to the production of immature spores (SpoVK)	peg.1746			
GTP-binding protein HflX	peg.1747	Universal_GTPases	Protein Metabolism	
Aluminum resistance protein	peg.1748			
negative regulation of the glutamine synthetase gene (glnA)	peg.1749			
Glutamine synthetase type I (EC 6.3.1.2)	peg.1750	"Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis|Glutamine_synthetases|Photorespiration_(oxidative_C2_cycle)"	Amino Acids and Derivatives|Carbohydrates	rxn00187|rxn03409|rxn03407|rxn03406
alternate gene name: ynaA	peg.1751			
YNZF protein	peg.1752			
Acetyltransferase (EC 2.3.1.-)	peg.1756|peg.3430			
ynaF	peg.1758			
Xyloside transporter XynT	peg.1761	Xylose_utilization	Carbohydrates	rxn05671
Beta-xylosidase (EC 3.2.1.37)	peg.1762	Xylose_utilization	Carbohydrates	
Xylose repressor XylR (ROK family)	peg.1763	Xylose_utilization	Carbohydrates	
Xylose isomerase (EC 5.3.1.5)	peg.1764	Xylose_utilization	Carbohydrates	rxn01044|rxn00223
Xylulose kinase (EC 2.7.1.17)	peg.1765	"Ribitol,_Xylitol,_Arabitol,_Mannitol_and_Sorbitol_utilization|Xylose_utilization"	Carbohydrates	rxn01199
staphylococcal nuclease	peg.1766|peg.2167			
sugar transport protein	peg.1767			
Homolog of alanine racemase (EC 5.1.1.1)	peg.1768			
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	peg.1770|peg.2006	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	rxn01519
spore coat protein (outer)	peg.1771			
Thymidylate synthase (EC 2.1.1.45)	peg.1772|peg.2188	Folate_Biosynthesis|pyrimidine_conversions	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Nucleosides and Nucleotides"	rxn01520
Spore coat protein C	peg.1774	Bsub-Spore-Coat	Cell Wall and Capsule	
Uncharacterized spore germination protein YndD	peg.1779			
Uncharacterized spore germination protein YndE	peg.1780			
Uncharacterized spore germination protein YndF	peg.1781			
phage protein	peg.1785|peg.1997|peg.1998|peg.2001|peg.2002|peg.2003|peg.2004|peg.2013|peg.2014|peg.2015|peg.2016|peg.2017|peg.2018|peg.2020|peg.2021|peg.2022|peg.2023|peg.2025|peg.2026|peg.2027|peg.2028|peg.2029|peg.2033|peg.2034|peg.2035|peg.2036|peg.2037|peg.2041|peg.2043|peg.2045|peg.2046|peg.2048|peg.2049|peg.2052|peg.2053|peg.2056|peg.2057|peg.2058|peg.2059|peg.2060|peg.2061|peg.2062|peg.2063|peg.2064			
Fosfomycin resistance protein FosB	peg.1788	Fosfomycin_resistance	Stress Response	
SOS-response repressor and protease LexA (EC 3.4.21.88)	peg.1789	"DNA_repair,_bacterial"	DNA Metabolism	
"ABC transport protein, sugar-binding component yneA"	peg.1790			
Transketolase (EC 2.2.1.1)	peg.1793	Calvin-Benson_cycle|Pentose_phosphate_pathway	Carbohydrates	rxn00785|rxn01200
alternate gene name: yoxF	peg.1794			
alternate gene name: yoxG	peg.1795			
Cytochrome c-type biogenesis protein CcdA (DsbD analog)	peg.1797	Periplasmic_disulfide_interchange	Protein Metabolism	
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY	peg.1798	Motility_of_Campylobacter	Motility and Chemotaxis	
alternate gene name: yoxI	peg.1799			
alternate gene name: yoxJ	peg.1800			
Spore coat protein M	peg.1801	Bsub-Spore-Coat	Cell Wall and Capsule	
"Small, acid-soluble spore protein P"	peg.1802	Bsub-Spore-Coat	Cell Wall and Capsule	
"Small, acid-soluble spore protein O"	peg.1803	Bsub-Spore-Coat	Cell Wall and Capsule	
2-methylisocitrate dehydratase (EC 4.2.1.99)	peg.1804	Methylcitrate_cycle|Propionate-CoA_to_Succinate_Module	Carbohydrates	rxn00973|rxn03061|rxn00974|rxn01388
Aconitate hydratase (EC 4.2.1.3)	peg.1804	Glyoxylate_Synthesis|Glyoxylate_bypass|Homogentisate_pathway_of_aromatic_compound_degradation|Propionate-CoA_to_Succinate_Module|Serine-glyoxylate_cycle|TCA_Cycle|YgfZ	"Carbohydrates|Metabolism of Aromatic Compounds|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00973|rxn03061|rxn00974|rxn01388
"Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase"	peg.1805	Periplasmic_disulfide_interchange	Protein Metabolism	
thioredoxin-like protein	peg.1806			
4-hydroxybenzoyl-CoA thioesterase family active site	peg.1807			rxn00965
Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY	peg.1810	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids and Lipids	rxn10208|rxn10206|rxn10210|rxn10203|rxn10209|rxn10202|rxn10207|rxn10205|rxn10204
CoA-binding domain protein	peg.1811			
Topoisomerase IV subunit B (EC 5.99.1.-)	peg.1812	"DNA_topoisomerases,_Type_II,_ATP-dependent|Resistance_to_fluoroquinolones"	DNA Metabolism|Virulence	rxn05294
Topoisomerase IV subunit A (EC 5.99.1.-)	peg.1813	"DNA_topoisomerases,_Type_II,_ATP-dependent|Resistance_to_fluoroquinolones"	DNA Metabolism|Virulence	rxn05294
amino acid carrier protein	peg.1815			
cellulose degradation	peg.1816			
Possible xylan degradation enzyme (glycosyl hydrolase family 30-like domain and Ricin B-like domain)	peg.1818			
xylan degradation	peg.1819|peg.1887			
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	peg.1821|peg.3088|peg.3573|peg.3576	Streptococcal_Hyaluronic_Acid_Capsule|Sucrose_Metabolism	Cell Wall and Capsule|Carbohydrates	rxn00213
Conserved protein YngD	peg.1823			
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	peg.1824	HMG_CoA_Synthesis|Leucine_Degradation_and_HMG-CoA_Metabolism|Serine-glyoxylate_cycle	Amino Acids and Derivatives|Carbohydrates	rxn02889
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	peg.1825	HMG_CoA_Synthesis|Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	rxn01504
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	peg.1826	HMG_CoA_Synthesis|Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	rxn00991
Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase	peg.1827	HMG_CoA_Synthesis|Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	rxn02889
Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)	peg.1828	HMG_CoA_Synthesis|Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	rxn02889
Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)	peg.1829	HMG_CoA_Synthesis	Amino Acids and Derivatives	rxn05252|rxn09449|rxn05247|rxn05248|rxn05249|rxn05251|rxn05736|rxn00947|rxn09448|rxn05250|rxn00988|rxn09450
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	peg.1830	HMG_CoA_Synthesis|Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives	rxn02866
FenI	peg.1832			
peptide synthetase	peg.1834|peg.1835|peg.1838			
PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSC	peg.1836	mycolic_acid_synthesis	Cell Wall and Capsule	
Phenolpthiocerol synthesis polyketide synthase ppsB	peg.1837	mycolic_acid_synthesis	Cell Wall and Capsule	
Galactose mutarotase related enzyme	peg.1840			
"DNA binding domain, excisionase family"	peg.1844			
Gamma-glutamyltranspeptidase (EC 2.3.2.2)	peg.1845|peg.3617	Poly-gamma-glutamate_biosynthesis|Utilization_of_glutathione_as_a_sulphur_source	Amino Acids and Derivatives|Sulfur Metabolism	rxn00350|rxn02791|rxn02727|rxn02792
"Transcriptional regulators, LysR family"	peg.1846			
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	peg.1848	"Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis|YgfZ"	"Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00085
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	peg.1849	"Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"	Amino Acids and Derivatives	rxn00085
"GltC, transcription activator of glutamate synthase operon"	peg.1850			
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	peg.1852|peg.2385	"A_Hypothetical_Protein_Related_to_Proline_Metabolism|Proline,_4-hydroxyproline_uptake_and_utilization|Proline_Synthesis"	Amino Acids and Derivatives	rxn00929|rxn00931
clockwise-fork arrest at terC	peg.1853			
Uncharacterized oxidoreductase yoxD (EC 1.-.-.-)	peg.1854			
Putative transporter yoaB	peg.1858			rxn05493
"sugar kinase, FGGY family, putative"	peg.1859			
Hydroxypyruvate reductase (EC 1.1.1.81)	peg.1860|peg.3474	"Glycerate_metabolism|Glycolate,_glyoxylate_interconversions|Photorespiration_(oxidative_C2_cycle)"	Carbohydrates	rxn01011|rxn00512|rxn00324|rxn01013
"Anaerobic dehydrogenases, typically selenocysteine-containing"	peg.1861|peg.4099	5-FCL-like_protein|Anaerobic_respiratory_reductases	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Respiration"	
YOAG protein	peg.1863			
4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3)	peg.1865	4-Hydroxyphenylacetic_acid_catabolic_pathway|Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	rxn01945|rxn02363
Gifsy-2 prophage protein	peg.1869|peg.1892|peg.2054			
Oxalate decarboxylase (EC 4.1.1.2)	peg.1870|peg.3330			rxn00373
GCN5-related N-acetyltransferase	peg.1872			
LysR family transcriptional regulator STM2281	peg.1879|peg.3405			
Beta-lactamase class A	peg.1883	Beta-lactamase	Virulence	rxn07099
Phosphoenolpyruvate synthase (EC 2.7.9.2)	peg.1886	"Glycolysis_and_Gluconeogenesis|Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes|Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	rxn00147
Predicted membrane protein	peg.1888			
Transcription regulator	peg.1889			
regulator of the activity of phosphatase RapK	peg.1896			
ImpB/MucB/SamB family protein	peg.1897|peg.1898			
YeeF	peg.1904|peg.2164|peg.2588|peg.3626			
Spore coat protein	peg.1905|peg.2165|peg.2697			
"amine oxidase, flavin-containing"	peg.1906			
Pre-neck appendage protein	peg.1907			
Chaperonin CsaA	peg.1908			
metallo-beta-lactamase family protein	peg.1912|peg.2653|peg.2944|peg.4076			
"Transcriptional regulator, DeoR family"	peg.1914			
Protein csk22	peg.1915			
Pneumococcal vaccine antigen A homolog	peg.1917			
Microcin C7 self-immunity protein mccF	peg.1921			
Fatty-acid desaturase (EC 1.14.99.-)	peg.1922			
Two-component response regulator	peg.1924|peg.3328|peg.3412			
ATP-dependent DNA helicase RecQ	peg.1926	"DNA-replication|DNA_repair,_bacterial_RecFOR_pathway"	DNA Metabolism	
FMN-dependent NADH-azoreductase	peg.1927|peg.3360			
dnaK suppressor protein	peg.1928			
hopanoid metabolism	peg.1937			
Superoxide dismutase [Fe] (EC 1.15.1.1)	peg.1938	Oxidative_stress|Protection_from_Reactive_Oxygen_Species|Regulation_of_Oxidative_Stress_Response	Stress Response	rxn00206
Sodium-dependent transporter	peg.1940			
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	peg.1941	Dehydrogenase_complexes|Lipoic_acid_metabolism|TCA_Cycle	"Carbohydrates|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01872
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	peg.1942	Dehydrogenase_complexes|TCA_Cycle	Carbohydrates	rxn00441|rxn02376
Nitric oxide reductase activation protein NorD	peg.1943			
Nitric oxide reductase activation protein NorQ	peg.1944			
Superoxide dismutase [Cu-Zn] (EC 1.15.1.1)	peg.1945	Regulation_of_Oxidative_Stress_Response	Stress Response	rxn00206
"Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps"	peg.1949	Multidrug_Resistance_Efflux_Pumps	Virulence	
YojH protein	peg.1950			
Uncharacterized conserved protein	peg.1951|peg.3199			
Protein rarD	peg.1953			
"Gluconate permease, Bsu4004 homolog"	peg.1956|peg.4013	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	rxn05571
Probable tautomerase yrdN (EC 5.3.2.-)	peg.1957			
Carboxylesterase (EC 3.1.1.1)	peg.1960|peg.3368			
carboxy-terminal processing protease	peg.1963			
Putative methyltransferase (EC 2.1.1.-)	peg.1964			
Purine nucleoside phosphorylase (EC 2.4.2.1)	peg.1967|peg.2354	Deoxyribose_and_Deoxynucleoside_Catabolism|Purine_conversions|pyrimidine_conversions	Carbohydrates|Nucleosides and Nucleotides	rxn01985|rxn01446|rxn01647|rxn01358|rxn01649|rxn01684|rxn01859|rxn01646|rxn01138|rxn01799|rxn01548
Membrane-associated phospholipid phosphatase	peg.1969			
"Lysine 2,3-aminomutase (EC 5.4.3.2)"	peg.1973	Lysine_degradation	Amino Acids and Derivatives	rxn00321
Beta-lysine acetyltransferase (EC 2.3.1.-)	peg.1974			
"Acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8)"	peg.1976	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	rxn00875
"Acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8)"	peg.1977	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	rxn00875
putative aminotransferase	peg.1978			
involved in maturation of the outermost layer of the spore	peg.1979|peg.1980|peg.1981|peg.1982|peg.1983			
alternate gene name: yzxA	peg.1984			rxn02417
"UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-)"	peg.1985	N-linked_Glycosylation_in_Bacteria	Virulence	rxn00215
alternate gene name: yodV	peg.1987			
YokH	peg.1988			
alternate gene name: yodW	peg.1991			
thioredoxin	peg.2007			
YOSQ protein	peg.2008			
intein-containing	peg.2010	Inteins	Protein Metabolism	
Modification methylase Phi3TI	peg.2030			
Putative SPBc2 prophage-derived 5'(3')-deoxyribonucleotidase (EC 3.1.3.-)	peg.2032			
YorM protein	peg.2038			
DNA polymerase III alpha subunit	peg.2039			
"Single-stranded-DNA-specific exonuclease recJ, Bacteriophage SPBc2-type"	peg.2040	"DNA_repair,_bacterial_RecFOR_pathway"	DNA Metabolism	
putative replicative DNA helicase	peg.2042			
ATP/GTP binding protein	peg.2044			
Stress response protein SCP1	peg.2047			
YorA protein	peg.2050			
ATP-dependent DNA ligase (EC 6.5.1.1)	peg.2055	"DNA_Repair_Base_Excision|DNA_replication,_archaeal"	DNA Metabolism	rxn05294
YoqJ protein	peg.2066			
putative antirepressor	peg.2072			
YOPS protein	peg.2083			
YOPD protein	peg.2099			
putative SPbeta phage repressor	peg.2108			
DNA-binding protein HBsu	peg.2111|peg.2283			rxn05294
YomS protein	peg.2130			
YOMR protein	peg.2131			
YOMP protein	peg.2133			
YOML protein	peg.2138			
immunity protein d	peg.2140			
Lytic transglycosylase	peg.2141			
N-acetylmuramoyl-L-alanine amidase	peg.2147|peg.2423|peg.2761	"Bacterial_Endolysins:_autolysins,_phage,_and_phage-like_lysins"	Virulence	rxn02875
Protein bhlA	peg.2148			
Protein bhlB	peg.2149			
SPBc2 prophage-derived disulfide bond formation protein B	peg.2150			
sublancin 168 lantibiotic transporter	peg.2153			
sublancin 168 lantibiotic antimicrobial precursor peptide	peg.2154			
UV-damage repair protein	peg.2156			
YOLD protein	peg.2157			
YOLB protein	peg.2159			
aminoglycoside N3-acetyltransferase	peg.2169			
Site-specific recombinase	peg.2172			
Peptide methionine sulfoxide reductase msrB (EC 1.8.4.12)	peg.2174			rxn09940
Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)	peg.2175	Cluster_Ytf_and_putative_sugar_transporter|Putative_sugar_ABC_transporter_(ytf_cluster)	Carbohydrates	rxn06077
CDS_ID OB3050	peg.2179			
Lipase/Acylhydrolase with GDSL-like motif	peg.2180			
"Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone"	peg.2181			
Threonine dehydratase biosynthetic (EC 4.3.1.19)	peg.2183	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	rxn00737
Nitrogen regulation protein NR(I)	peg.2184			
Hemolysin III	peg.2185			
Dihydrofolate reductase (EC 1.5.1.3)	peg.2187	Folate_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00686|rxn01602
Low temperature requirement C protein	peg.2189|peg.3234			
Dihydroxy-acid dehydratase (EC 4.2.1.9)	peg.2193	Branched-Chain_Amino_Acid_Biosynthesis	Amino Acids and Derivatives	rxn03437|rxn09889|rxn00898
PBS lyase HEAT-like repeat domain protein	peg.2194			
HD domain protein	peg.2195			
Glutathione peroxidase family protein	peg.2196			rxn00205
Homoserine O-succinyltransferase (EC 2.3.1.46)	peg.2197	Methionine_Biosynthesis	Amino Acids and Derivatives	rxn01304
diglucosyldiacylglycerol synthase (LTA membrane anchor synthesis)	peg.2198	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	rxn10279|rxn10277|rxn10272|rxn10278|rxn10275|rxn10273|rxn10271|rxn10276|rxn10274
Cold shock protein CspA	peg.2199	"Cold_shock,_CspA_family_of_proteins"	Stress Response	
"activation of degradative enzymes (aprE, nprE, sacB)"	peg.2200			
Putative preQ0 transporter	peg.2204	Queuosine-Archaeosine_Biosynthesis	RNA Metabolism	
RNase H	peg.2205			
DNA polymerase I (EC 2.7.7.7)	peg.2206|peg.2912	DNA-replication|DNA_Repair_Base_Excision	DNA Metabolism	
phenylalanine metabolism	peg.2210			
xanthine permease	peg.2211			rxn05201|rxn05202
Xanthine phosphoribosyltransferase (EC 2.4.2.-)	peg.2212	Purine_conversions	Nucleosides and Nucleotides	rxn01544
Thermostable carboxypeptidase 1 (EC 3.4.17.19)	peg.2213			
2-keto-3-deoxygluconate permease (KDG permease)	peg.2214	D-Galacturonate_Utilization	Carbohydrates	rxn05681
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	peg.2215	D-Galacturonate_Utilization|D-gluconate_and_ketogluconates_metabolism|Entner-Doudoroff_Pathway|Formaldehyde_assimilation:_Ribulose_monophosphate_pathway	Carbohydrates	rxn03884|rxn00328
4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)	peg.2215	"Glyoxylate_bypass|Proline,_4-hydroxyproline_uptake_and_utilization"	Carbohydrates|Amino Acids and Derivatives	rxn03884|rxn00328
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	peg.2216	D-Galacturonate_Utilization|Entner-Doudoroff_Pathway	Carbohydrates	rxn01123
"Transcriptional regulator KdgR, KDG operon repressor"	peg.2217	D-Galacturonate_Utilization	Carbohydrates	
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	peg.2218			rxn03043
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	peg.2219			rxn01124
DinG family ATP-dependent helicase YpvA	peg.2220	"DNA_repair,_bacterial_DinG_and_relatives"	DNA Metabolism	
FIG001721: Predicted N6-adenine-specific DNA methylase	peg.2222			
"Cell division protein GpsB, coordinates the switch between cylindrical and septal cell wall synthesis by re-localization of PBP1"	peg.2223			
Inner spore coat protein D	peg.2225	Bsub-Spore-Coat	Cell Wall and Capsule	
Predicted exonuclease	peg.2226			
ATP-dependent RNA helicase	peg.2227			
Uncharacterized protein YppC	peg.2234			
Recombination protein RecU	peg.2235			
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	peg.2236	Type_IV_pilus	Virulence	
Penicillin-binding protein 1A/1B (PBP1)	peg.2236	Methicillin_resistance_in_Staphylococci	Virulence	
Endonuclease III (EC 4.2.99.18)	peg.2238	DNA_Repair_Base_Excision	DNA Metabolism	
Chromosome replication initiation protein dnaD	peg.2239			rxn05294
Asparaginyl-tRNA synthetase (EC 6.1.1.22)	peg.2240	Asp-tRNA(Asn)_transamidation|Glu-tRNA(Gln)_transamidation|tRNA_aminoacylation|tRNA_modification_Archaea	Protein Metabolism|RNA Metabolism	rxn05296
Aspartate aminotransferase (EC 2.6.1.1)	peg.2241|peg.3775	"Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress|Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis|Phenylalanine_synthesis|Proline,_4-hydroxyproline_uptake_and_utilization|Threonine_and_Homoserine_Biosynthesis"	Amino Acids and Derivatives	rxn02339|rxn00260
DinG family ATP-dependent helicase YoaA	peg.2244	"DNA_repair,_bacterial_DinG_and_relatives"	DNA Metabolism	
Aspartate 1-decarboxylase (EC 4.1.1.11)	peg.2245	Coenzyme_A_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00346
Pantoate--beta-alanine ligase (EC 6.3.2.1)	peg.2246	Coenzyme_A_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01791
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	peg.2247	Coenzyme_A_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00912
Biotin operon repressor	peg.2248	Biotin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn06672
Biotin-protein ligase (EC 6.3.4.15)	peg.2248	Biotin_biosynthesis|Iojap	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Protein Metabolism"	rxn06672
tRNA nucleotidyltransferase (EC 2.7.7.25)	peg.2249	Polyadenylation_bacterial|tRNA_nucleotidyltransferase	RNA Metabolism	rxn05295
Lmbe-related protein	peg.2251			
Methylglyoxal synthase (EC 4.2.3.3)	peg.2252	Methylglyoxal_Metabolism	Carbohydrates	rxn00748
Dihydrodipicolinate reductase (EC 1.3.1.26)	peg.2253	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	rxn02929
MazG nucleotide pyrophosphohydrolase	peg.2254			
Hypothetical transmembrane protein CDS_ID OB1773	peg.2257			
"Menaquinone-cytochrome C oxidoreductase, cytochrome C subunit"	peg.2258	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	rxn10044
"Menaquinone-cytochrome c reductase, cytochrome B subunit"	peg.2259	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	rxn10044
Menaquinone-cytochrome C reductase iron-sulfur subunit	peg.2260	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	rxn10044
"TPR-repeat-containing protein, putative component of Menaquinone-cytochrome C reductase"	peg.2263	Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes	Respiration	
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)	peg.2264	Chorismate_Synthesis|Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	rxn02476
Prephenate dehydrogenase (EC 1.3.1.12)	peg.2265	Chorismate_Synthesis|Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	rxn01268
Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)	peg.2266	"Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress|Phenylalanine_and_Tyrosine_Branches_from_Chorismate"	Amino Acids and Derivatives	rxn00527|rxn02320|rxn00493|rxn01270
Histidinol-phosphate aminotransferase (EC 2.6.1.9)	peg.2266	"Aminotransferases:Aromatic_Pathway_and_More,_A_work_in_progress|Histidine_Biosynthesis|Homogentisate_pathway_of_aromatic_compound_degradation"	Amino Acids and Derivatives|Metabolism of Aromatic Compounds	rxn00527|rxn02320|rxn00493|rxn01270
Tryptophan synthase alpha chain (EC 4.2.1.20)	peg.2267	Auxin_biosynthesis|Tryptophan_synthesis	Secondary Metabolism|Amino Acids and Derivatives	rxn01682|rxn01964|rxn00474
Tryptophan synthase beta chain (EC 4.2.1.20)	peg.2268	Auxin_biosynthesis|Tryptophan_synthesis	Secondary Metabolism|Amino Acids and Derivatives	rxn01682|rxn01964|rxn00474
Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	peg.2269	Auxin_biosynthesis|Tryptophan_synthesis	Secondary Metabolism|Amino Acids and Derivatives	rxn02508
Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	peg.2270	Tryptophan_synthesis	Amino Acids and Derivatives	rxn02507
Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	peg.2271	Auxin_biosynthesis|Tryptophan_synthesis	Secondary Metabolism|Amino Acids and Derivatives	rxn00791
"Anthranilate synthase, aminase component (EC 4.1.3.27)"	peg.2272	"Chorismate:_Intermediate_for_synthesis_of_PAPA_antibiotics,_PABA,_anthranilate,_3-hydroxyanthranilate_and_more.|Tryptophan_synthesis"	Amino Acids and Derivatives	rxn00727|rxn00726
Chorismate mutase II (EC 5.4.99.5)	peg.2273	Chorismate_Synthesis|Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	rxn01256
3-dehydroquinate synthase (EC 4.2.3.4)	peg.2274	Chorismate_Synthesis|Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)|Type_IV_pilus	Amino Acids and Derivatives|Virulence	rxn02212
Chorismate synthase (EC 4.2.3.5)	peg.2275	Chorismate_Synthesis|Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)|YgfZ	"Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01255
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)	peg.2276			
Nucleoside diphosphate kinase (EC 2.7.4.6)	peg.2277	Purine_conversions|pyrimidine_conversions	Nucleosides and Nucleotides	rxn00515|rxn01678|rxn00117|rxn00839|rxn00409|rxn01512|rxn01673|rxn01353|rxn00237
Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)	peg.2278			rxn03891|rxn01486|rxn03892|rxn05287
Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)	peg.2280			rxn03891|rxn01486|rxn03892|rxn05287
Transcription attenuation protein mtrB	peg.2281			
GTP cyclohydrolase I (EC 3.5.4.16) type 1	peg.2282	Folate_Biosynthesis|Methanopterin_biosynthesis2|Pterin_biosynthesis|Pterin_metabolism|Pterin_metabolism_3|Queuosine-Archaeosine_Biosynthesis|tRNA_modification_Archaea_Henri|tRNA_modification_Bacteria	"Cofactors, Vitamins, Prosthetic Groups, Pigments|RNA Metabolism"	rxn00299
Stage IV sporulation protein A	peg.2284	Bsub-Spore-Coat	Cell Wall and Capsule	
ABC transporter periplasmic binding protein yphF	peg.2285			
ABC transporter ATP-binding protein yphE	peg.2286			
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	peg.2287	Glycerol_and_Glycerol-3-phosphate_Uptake_and_Utilization|Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Carbohydrates|Fatty Acids and Lipids	rxn00611|rxn00612
GTP-binding protein EngA	peg.2288	Universal_GTPases	Protein Metabolism	
"Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)"	peg.2291	Archaeal_lipids|Isoprenoid_Biosynthesis|Isoprenoid_Biosynthesis:_Interconversions	"Fatty Acids and Lipids|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00830
SSU ribosomal protein S1p	peg.2292	Ribosome_SSU_bacterial	Protein Metabolism	
Cytidylate kinase (EC 2.7.4.14)	peg.2293	pyrimidine_conversions	Nucleosides and Nucleotides	rxn00364|rxn01219
alternate gene name: jofB	peg.2294			
alternate gene name: jofA	peg.2295			
Spore germination protein YpeB	peg.2296			
"Spore cortex-lytic enzyme, lytic transglycosylase SleB"	peg.2297			
pyridine nucleotide-disulfide oxidoreductase family protein	peg.2299			
NAD-specific glutamate dehydrogenase (EC 1.4.1.2)	peg.2300|peg.3785	"Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"	Amino Acids and Derivatives	rxn00182
"ATP-dependent DNA helicase, RecQ family"	peg.2306	"DNA_repair,_bacterial_RecFOR_pathway"	DNA Metabolism	
alternate gene name: ypbA	peg.2308			
Substrate-specific component RibU of riboflavin ECF transporter	peg.2309	"Riboflavin,_FMN_and_FAD_metabolism"	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05645
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	peg.2311	Glycine_and_Serine_Utilization|Pyridoxin_(Vitamin_B6)_Biosynthesis|Serine_Biosynthesis	"Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01101
3-dehydroquinate dehydratase I (EC 4.2.1.10)	peg.2312	Chorismate_Synthesis|Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)|Quinate_degradation	Amino Acids and Derivatives|Metabolism of Aromatic Compounds	rxn02213
Sigma-X negative effector	peg.2313			
RNA polymerase sigma factor SigX	peg.2314			
Sensor protein resE (EC 2.7.3.-)	peg.2315			
Transcriptional regulatory protein ResD	peg.2316			
Cytochrome c-type biogenesis protein CcsA/ResC	peg.2317			
Cytochrome c-type biogenesis protein Ccs1/ResB	peg.2318			
Cytochrome c-type biogenesis protein ResA	peg.2319			
Ribosomal large subunit pseudouridine synthase B (EC 5.4.99.-)	peg.2320	Two_cell_division_clusters_relating_to_chromosome_partitioning|rRNA_modification_Bacteria	Cell Division and Cell Cycle|RNA Metabolism	
Spore maturation protein B	peg.2321			
Spore maturation protein A	peg.2322			
"5' end uncertain, first prokaryotic start codon used in the ORF"	peg.2324			
Segregation and condensation protein B	peg.2325	CBSS-203122.12.peg.188|Two_cell_division_clusters_relating_to_chromosome_partitioning	DNA Metabolism|Cell Division and Cell Cycle	rxn05294
Segregation and condensation protein A	peg.2326	Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle	rxn05294
DUF309 domain-containing protein	peg.2327			
riboflavin biosynthesis	peg.2328			rxn00048
"6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)"	peg.2329	"Riboflavin,_FMN_and_FAD_metabolism"	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn03080
"3,4-dihydroxy-2-butanone 4-phosphate synthase"	peg.2330	"Riboflavin,_FMN_and_FAD_metabolism"	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00300|rxn05040
GTP cyclohydrolase II (EC 3.5.4.25)	peg.2330	"Riboflavin,_FMN_and_FAD_metabolism|YgfZ"	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00300|rxn05040
Riboflavin synthase alpha chain (EC 2.5.1.9)	peg.2331	"Riboflavin,_FMN_and_FAD_metabolism"	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00048
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	peg.2332	"Riboflavin,_FMN_and_FAD_metabolism"	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02474|rxn02475
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	peg.2332	"Riboflavin,_FMN_and_FAD_metabolism"	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02474|rxn02475
Predicted nucleic-acid-binding protein containing a Zn-ribbon domain	peg.2337			
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)	peg.2341			
Extracellular protein	peg.2342			
Diaminopimelate decarboxylase (EC 4.1.1.20)	peg.2343	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	rxn00313
Stage V sporulation protein AF (SpoVAF)	peg.2344			
Stage V sporulation protein AE (SpoVAE)	peg.2345			
Stage V sporulation protein AD (SpoVAD)	peg.2346			
Stage V sporulation protein AC (SpoVAC)	peg.2347			
Stage V sporulation protein AB (SpoVAB)	peg.2348			
Stage V sporulation protein AA (SpoVAA)	peg.2349			
RNA polymerase sporulation specific sigma factor SigF	peg.2350	"Transcription_initiation,_bacterial_sigma_factors"	RNA Metabolism	
Anti-sigma F factor (EC 2.7.11.1)	peg.2351			
Phosphopentomutase (EC 5.4.2.7)	peg.2355	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	rxn01986|rxn00778
Integrase/recombinase xerD	peg.2356			
Ferric uptake regulation protein FUR	peg.2357	Iron_acquisition_in_Vibrio|Oxidative_stress|Transport_of_Iron|YgfZ	"Virulence|Stress Response|Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Stage II sporulation protein M (SpoIIM)	peg.2358			
Malolactic enzyme (EC 1.-.-.-)	peg.2360	"Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	rxn00159
Malate Na(+) symporter	peg.2361|peg.3161	"Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	rxn05207
Aspartate ammonia-lyase (EC 4.3.1.1)	peg.2362	"Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis"	Amino Acids and Derivatives	rxn00347
negative regulation of the ansAB operon	peg.2364			
DNA helicase II (EC 3.6.1.-)	peg.2365			
ADP-ribose pyrophosphatase (EC 3.6.1.13)	peg.2366	NAD_and_NADP_cofactor_biosynthesis_global|Nudix_proteins_(nucleoside_triphosphate_hydrolases)	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Nucleosides and Nucleotides"	rxn00775
DNA polymerase IV (EC 2.7.7.7)	peg.2376|peg.2392	"DNA_repair,_bacterial"	DNA Metabolism	
Pantothenate kinase (EC 2.7.1.33)	peg.2381	Coenzyme_A_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn12510
D-serine dehydratase (EC 4.3.1.18)	peg.2382	Glycine_and_Serine_Utilization|Pyruvate_Alanine_Serine_Interconversions	Amino Acids and Derivatives|Carbohydrates	rxn00166
"oxidoreductase, short-chain dehydrogenase/reductase family"	peg.2383|peg.3303			
Zinc metallohydrolase	peg.2384			
RocB protein	peg.2386			
NADH-dependent flavin oxidoreductase	peg.2387			
"abhydrolase, alpha/beta hydrolase fold"	peg.2388|peg.2693			
Ribonuclease Z (EC 3.1.26.11)	peg.2389	tRNA_processing	RNA Metabolism	
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	peg.2390	Entner-Doudoroff_Pathway|Fermentations:_Lactate|Formaldehyde_assimilation:_Ribulose_monophosphate_pathway|Glycolysis_and_Gluconeogenesis|Pentose_phosphate_pathway	Carbohydrates	rxn00604
"6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)"	peg.2391|peg.4014	D-gluconate_and_ketogluconates_metabolism|Entner-Doudoroff_Pathway|Formaldehyde_assimilation:_Ribulose_monophosphate_pathway|Pentose_phosphate_pathway	Carbohydrates	rxn01115
OxaI/YidC membrane insertion protein	peg.2393|peg.4110			
Vng1746c	peg.2394			
Peptidase T (EC 3.4.11.4)	peg.2395			rxn00350
Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	peg.2396|peg.2923	Fatty_Acid_Biosynthesis_FASII|Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Fatty Acids and Lipids|Respiration	rxn01355|rxn06673
Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	peg.2396|peg.2924	Fatty_Acid_Biosynthesis_FASII|Na+_translocating_decarboxylases_and_related_biotin-dependent_enzymes	Fatty Acids and Lipids|Respiration	rxn01355|rxn06673
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	peg.2396	Serine-glyoxylate_cycle	Carbohydrates	rxn01355
Lactoylglutathione lyase and related lyases	peg.2397|peg.2696|peg.3271|peg.3842			rxn01834
"amino acid ABC transporter, amino acid-binding protein"	peg.2402			
multidrug-efflux transporter	peg.2405|peg.2661			
positive regulation of the bmrUR operon	peg.2406			
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	peg.2407	Dehydrogenase_complexes|Isoleucine_degradation|Leucine_Degradation_and_HMG-CoA_Metabolism|Lipoic_acid_metabolism|Valine_degradation	"Carbohydrates|Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01925|rxn06335|rxn06586
"Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)"	peg.2408	Dehydrogenase_complexes|Isoleucine_degradation|Leucine_Degradation_and_HMG-CoA_Metabolism|Valine_degradation	Carbohydrates|Amino Acids and Derivatives	rxn07431|rxn07430|rxn07435|rxn07434|rxn07432|rxn07433
"Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)"	peg.2409	Dehydrogenase_complexes|Isoleucine_degradation|Leucine_Degradation_and_HMG-CoA_Metabolism|Valine_degradation	Carbohydrates|Amino Acids and Derivatives	rxn07431|rxn07430|rxn07435|rxn07434|rxn07432|rxn07433
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4)	peg.2410	Dehydrogenase_complexes|Isoleucine_degradation|Leucine_Degradation_and_HMG-CoA_Metabolism|Valine_degradation	Carbohydrates|Amino Acids and Derivatives	rxn01241
Butyrate kinase (EC 2.7.2.7)	peg.2411	Acetyl-CoA_fermentation_to_Butyrate|Isoleucine_degradation|Valine_degradation	Carbohydrates|Amino Acids and Derivatives	rxn01236
Leucine dehydrogenase (EC 1.4.1.9)	peg.2412	Branched-Chain_Amino_Acid_Biosynthesis|Dehydrogenase_complexes|Leucine_Degradation_and_HMG-CoA_Metabolism	Amino Acids and Derivatives|Carbohydrates	rxn01573|rxn00804|rxn01045
Phosphate butyryltransferase (EC 2.3.1.19)	peg.2413	Acetyl-CoA_fermentation_to_Butyrate|Isoleucine_degradation|Valine_degradation	Carbohydrates|Amino Acids and Derivatives	rxn00871
Transcriptional regulator BkdR of isoleucine and valine catabolism operon	peg.2414	Dehydrogenase_complexes|Isoleucine_degradation|Valine_degradation	Carbohydrates|Amino Acids and Derivatives	
Methylisocitrate lyase (EC 4.1.3.30)	peg.2416	Methylcitrate_cycle|Propionate-CoA_to_Succinate_Module	Carbohydrates	rxn00289
2-methylcitrate dehydratase (EC 4.2.1.79)	peg.2417	Methylcitrate_cycle|Propionate-CoA_to_Succinate_Module	Carbohydrates	rxn03060
2-methylcitrate synthase (EC 2.3.3.5)	peg.2418	Methylcitrate_cycle|Propionate-CoA_to_Succinate_Module	Carbohydrates	rxn00679
Butyryl-CoA dehydrogenase (EC 1.3.99.2)	peg.2419	Acetyl-CoA_fermentation_to_Butyrate|Isobutyryl-CoA_to_Propionyl-CoA_Module|Isoleucine_degradation|Valine_degradation	Carbohydrates|Amino Acids and Derivatives	rxn01923|rxn02268
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	peg.2420|peg.3289	Acetyl-CoA_fermentation_to_Butyrate|Isoleucine_degradation|Valine_degradation|n-Phenylalkanoic_acid_degradation	Carbohydrates|Amino Acids and Derivatives|Metabolism of Aromatic Compounds	rxn01451|rxn02933|rxn03239|rxn03246|rxn04750|rxn03242|rxn03244|rxn01452|rxn03249|rxn06777
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)	peg.2420	Acetyl-CoA_fermentation_to_Butyrate|Anaerobic_benzoate_metabolism|Butanol_Biosynthesis	Carbohydrates|Metabolism of Aromatic Compounds	rxn01452
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	peg.2421	Isobutyryl-CoA_to_Propionyl-CoA_Module|Isoleucine_degradation	Carbohydrates|Amino Acids and Derivatives	rxn03248|rxn06510|rxn00676|rxn02804|rxn00874|rxn03243|rxn00178|rxn02680
Glycerophosphoryl diester phosphodiesterase family protein	peg.2422			rxn01073|rxn08669|rxn00758
Probable NADH-dependent flavin oxidoreductase yqiG (EC 1.-.-.-)	peg.2425			
Stage 0 sporulation two-component response regulator (Spo0A)	peg.2426			
Stage IV sporulation protein B	peg.2427			
DNA repair protein RecN	peg.2428	"DNA-replication|DNA_repair,_bacterial"	DNA Metabolism	
"Arginine pathway regulatory protein ArgR, repressor of arg regulon"	peg.2429	Arginine_Biosynthesis_extended|Arginine_Deiminase_Pathway|Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	
RNA binding methyltransferase FtsJ like	peg.2430	rRNA_modification_Bacteria|tRNA_modification_Bacteria	RNA Metabolism	
1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	peg.2431	Isoprenoid_Biosynthesis|Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis|Pyridoxin_(Vitamin_B6)_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn03909
Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10)	peg.2432	Archaeal_lipids|Carotenoids|Isoprenoid_Biosynthesis|Isoprenoid_Biosynthesis:_Interconversions	"Fatty Acids and Lipids|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01466|rxn01213
Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	peg.2433	"DNA_repair,_bacterial"	DNA Metabolism	
Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)	peg.2434	"DNA_repair,_bacterial"	DNA Metabolism	
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	peg.2435	One-carbon_metabolism_by_tetrahydropterines|Serine-glyoxylate_cycle	Carbohydrates	rxn00907|rxn00690|rxn01211
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	peg.2435	Folate_Biosynthesis|One-carbon_metabolism_by_tetrahydropterines|Serine-glyoxylate_cycle	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Carbohydrates"	rxn00907|rxn00690|rxn01211
Transcription termination protein NusB	peg.2436	Transcription_factors_bacterial	RNA Metabolism	
Alkaline shock protein	peg.2437			
Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	peg.2438	Fatty_Acid_Biosynthesis_FASII	Fatty Acids and Lipids	rxn06672
Biotin carboxyl carrier protein of acetyl-CoA carboxylase	peg.2439	Fatty_Acid_Biosynthesis_FASII	Fatty Acids and Lipids	rxn06672
Stage III sporulation protein AH	peg.2440			
Stage III sporulation protein AG	peg.2441			
Stage III sporulation protein AF	peg.2442			
Stage III sporulation protein AE	peg.2443			
Stage III sporulation protein AD	peg.2444			
Stage III sporulation protein AC	peg.2445			
Stage III sporulation protein AB	peg.2446			
Stage III sporulation protein AA	peg.2447			
alternate gene name: yqgE	peg.2448			
Translation elongation factor P	peg.2449	Translation_elongation_factors_eukaryotic_and_archaeal|Translation_factors_bacterial	Protein Metabolism	
Translation initiation factor 5A	peg.2449			
"Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)"	peg.2450	Protein_degradation	Protein Metabolism	
3-dehydroquinate dehydratase II (EC 4.2.1.10)	peg.2451	Chorismate_Synthesis|Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)|Quinate_degradation	Amino Acids and Derivatives|Metabolism of Aromatic Compounds	rxn02213
"lipoprotein,"	peg.2453			
lysophospholipase-like family protein	peg.2455			
Mn-dependent transcriptional regulator MntR	peg.2456			
Rhodanese-like domain protein	peg.2458	tRNA_modification_Archaea	RNA Metabolism	
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	peg.2459	Glycine_and_Serine_Utilization|Glycine_cleavage_system|Lipoic_acid_metabolism|Photorespiration_(oxidative_C2_cycle)	"Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments|Carbohydrates"	rxn00908
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	peg.2460	Glycine_and_Serine_Utilization|Glycine_cleavage_system|Photorespiration_(oxidative_C2_cycle)	Amino Acids and Derivatives|Carbohydrates	rxn00908
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	peg.2461	Glycine_and_Serine_Utilization|Glycine_cleavage_system|Photorespiration_(oxidative_C2_cycle)|YgfZ	"Amino Acids and Derivatives|Carbohydrates|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00908
"Superfamily II DNA/RNA helicases, SNF2 family"	peg.2462			
Conserved protein YqhG	peg.2463			
"SinI protein, antagonist of SinR"	peg.2464			
"SinR, regulator of post-exponential-phase responses genes (competence and sporulation)"	peg.2465			
"Stationary phase secreted protein TasA, major protein component of biofilm matrix"	peg.2466			
"Signal peptidase SipW (EC 3.4.21.89), required for TasA secretion"	peg.2467			
"YqxM protein, required for localization of TasA to extracellular matrix"	peg.2468			
"Late competence protein ComGG, FIG028917"	peg.2471	Late_competence	DNA Metabolism	
"Late competence protein ComGF, access of DNA to ComEA, FIG012620"	peg.2472	Late_competence	DNA Metabolism	
"Late competence protein ComGE, FIG015513"	peg.2473	Late_competence	DNA Metabolism	
"Late competence protein ComGD, access of DNA to ComEA, FIG012777"	peg.2474	Late_competence	DNA Metabolism	
"Late competence protein ComGC, access of DNA to ComEA, FIG007487"	peg.2475	Late_competence	DNA Metabolism	
"Late competence protein ComGB, access of DNA to ComEA"	peg.2476	Gram_Positive_Competence|Late_competence|gram_plus_late_competence	DNA Metabolism	
"Late competence protein ComGA, access of DNA to ComEA"	peg.2477	Gram_Positive_Competence|Late_competence|gram_plus_late_competence	DNA Metabolism	
Magnesium and cobalt transport protein corA	peg.2478			rxn05616|rxn10474
STAS domain protein	peg.2480			
"Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis"	peg.2483			rxn01274
Ecm15p	peg.2485			
ExtraCellular Mutant	peg.2485			
Gamma-D-glutamyl-L-diamino acid endopeptidase I (EC 3.4.19.11)	peg.2487			
Glucokinase (EC 2.7.1.2)	peg.2489	Entner-Doudoroff_Pathway|Glycolysis_and_Gluconeogenesis|Sucrose_Metabolism	Carbohydrates	rxn00216
"membrane protein, Rhomboid family"	peg.2491			
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	peg.2493	5-FCL-like_protein|Folate_Biosynthesis|One-carbon_metabolism_by_tetrahydropterines|Serine-glyoxylate_cycle	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Carbohydrates"	rxn01653
COG0438: Glycosyltransferase	peg.2495			
YQZC protein	peg.2498			
Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	peg.2499|peg.2500			rxn05145
"Putative periplasmic phosphate-binding protein PstS, Mycoplasma type"	peg.2501			rxn05145
Phosphate transport system permease protein pstC (TC 3.A.1.7.1)	peg.2502			rxn05145
"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)"	peg.2503			rxn05145
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	peg.2504	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	rxn10199
"Transpeptidase, Penicillin binding protein transpeptidase domain"	peg.2504			rxn10199
Manganese superoxide dismutase (EC 1.15.1.1)	peg.2506	Bsub-Spore-Coat|Oxidative_stress|Protection_from_Reactive_Oxygen_Species	Cell Wall and Capsule|Stress Response	rxn00206
probable membrane protein NMA1128	peg.2507			
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.4.3)	peg.2511	Isoprenoid_Biosynthesis|Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn06991
HAD-superfamily hydrolase-like protein	peg.2513			
Zinc uptake regulation protein ZUR	peg.2514	Oxidative_stress	Stress Response	
Endonuclease IV (EC 3.1.21.2)	peg.2517	"DNA_repair,_bacterial"	DNA Metabolism	
ATP-dependent RNA helicase YqfR	peg.2518	"ATP-dependent_RNA_helicases,_bacterial"	RNA Metabolism	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	peg.2520	Isoprenoid_Biosynthesis|Nonmevalonate_Branch_of_Isoprenoid_Biosynthesis|polyprenyl_synthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn04113|rxn04996
Putative tRNA-m1A22 methylase	peg.2522	tRNA_modification_Bacteria	RNA Metabolism	
Membrane-attached cytochrome c550	peg.2523			
RNA polymerase sigma factor RpoD	peg.2524	"Flagellum|Macromolecular_synthesis_operon|Transcription_factors_cyanobacterial_RpoD-like_sigma_factors|Transcription_initiation,_bacterial_sigma_factors"	Motility and Chemotaxis|Macromolecular Synthesis|RNA Metabolism	rxn05295
DNA primase (EC 2.7.7.-)	peg.2525	DNA-replication|Macromolecular_synthesis_operon	DNA Metabolism|Macromolecular Synthesis	rxn05294
probable P23 protein	peg.2526			
"ATP/GTP-binding protein, SA1392 homolog"	peg.2527			
Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	peg.2529	tRNA_aminoacylation	Protein Metabolism	rxn05296
Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	peg.2530	tRNA_aminoacylation	Protein Metabolism	rxn05296
DNA recombination and repair protein RecO	peg.2531	"DNA_repair,_bacterial_RecFOR_pathway"	DNA Metabolism	
GTP-binding protein Era	peg.2532	Bacterial_Cell_Division|Universal_GTPases|tRNA_modification_Archaea	Cell Division and Cell Cycle|Protein Metabolism|RNA Metabolism	
Cytidine deaminase (EC 3.5.4.5)	peg.2533	Murein_hydrolase_regulation_and_cell_death|pyrimidine_conversions|tRNA_modification_Bacteria	Cell Division and Cell Cycle|Nucleosides and Nucleotides|RNA Metabolism	rxn01800
Diacylglycerol kinase (EC 2.7.1.107)	peg.2534	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids and Lipids	rxn10243|rxn08297|rxn10241|rxn09065|rxn08299|rxn10255|rxn10240|rxn10253|rxn10239|rxn09063|rxn10258|rxn10242|rxn10256|rxn10257|rxn10238|rxn10254|rxn08295|rxn09067
predicted metal-dependent hydrolase	peg.2535			
"Membrane protein containing HD superfamily hydrolase domain, YQFF ortholog"	peg.2536			
"Phosphate starvation-inducible protein PhoH, predicted ATPase"	peg.2537			
Stage IV sporulation protein	peg.2538			
DUF1432 domain-containing protein	peg.2541			
GatB Yqey domain protein	peg.2543			
SSU ribosomal protein S21p	peg.2544	Macromolecular_synthesis_operon|Ribosome_SSU_bacterial	Macromolecular Synthesis|Protein Metabolism	rxn05296
Sodium-dependent phosphate transporter	peg.2545			rxn05313
"MiaB family protein, possibly involved in tRNA or rRNA modification"	peg.2546			
Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	peg.2547	rRNA_modification_Bacteria	RNA Metabolism	
Ribosomal protein L11 methyltransferase (EC 2.1.1.-)	peg.2548	Ribosome_biogenesis_bacterial	Protein Metabolism	
Chaperone protein DnaJ	peg.2549	Protein_chaperones	Protein Metabolism	
Chaperone protein DnaK	peg.2550	Protein_chaperones	Protein Metabolism	
Heat shock protein GrpE	peg.2551	Protein_chaperones	Protein Metabolism	
Heat-inducible transcription repressor HrcA	peg.2552	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
"Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent (EC 1.3.99.22), in heat shock gene cluster"	peg.2553	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn04704
Translation elongation factor LepA	peg.2554	Heme_and_Siroheme_Biosynthesis|Translation_factors_bacterial|Universal_GTPases	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Protein Metabolism"	
alternate gene name: yqeP	peg.2555			
Stage II sporulation protein P	peg.2556			
Endopeptidase spore protease Gpr (EC 3.4.24.78)	peg.2557	Small_acid-soluble_spore_proteins	Dormancy and Sporulation	
SSU ribosomal protein S20p	peg.2558	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
DNA polymerase III delta subunit (EC 2.7.7.7)	peg.2559	DNA-replication	DNA Metabolism	rxn05294
"Late competence protein ComEC, DNA transport"	peg.2560	Gram_Positive_Competence|Late_competence|gram_plus_late_competence	DNA Metabolism	
Late competence protein ComEB	peg.2561	Late_competence	DNA Metabolism	rxn01217
dCMP deaminase (EC 3.5.4.12)	peg.2561			rxn01217
"Late competence protein ComEA, DNA receptor"	peg.2562	Gram_Positive_Competence|Late_competence|gram_plus_late_competence	DNA Metabolism	
"Late competence protein ComER, proline oxidase (EC 1.5.1.2)"	peg.2563	Late_competence|Proline_Synthesis	DNA Metabolism|Amino Acids and Derivatives	
FIG030922: Ubiquinone/menaquinone biosynthesis methyltransferase UbiE/ COQ5 (EC 2.1.1.-)	peg.2564			
FIGfam135315: Iojap-related protein	peg.2565	Iojap|NAD_and_NADP_cofactor_biosynthesis_global|tRNA_modification_Bacteria	"Protein Metabolism|Cofactors, Vitamins, Prosthetic Groups, Pigments|RNA Metabolism"	
"Hydrolase (HAD superfamily), YqeK"	peg.2566	NAD_and_NADP_cofactor_biosynthesis_global	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	peg.2567	Iojap|NAD_and_NADP_cofactor_biosynthesis_global|NAD_regulation	"Protein Metabolism|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00105|rxn02155
FIG004454: RNA binding protein	peg.2568			
Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	peg.2569	Chorismate_Synthesis|Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	rxn01740
"GTP-binding protein YqeH, possibly involved in replication initiation"	peg.2570	Universal_GTPases	Protein Metabolism	
"FIG001553: Hydrolase, HAD subfamily IIIA"	peg.2571			
N-acetylmuramoyl-L-alanine amidase cwlH precursor (EC 3.5.1.28)	peg.2573			rxn02875
"Uncharacterized protein yqeC, similar to 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)"	peg.2575			
nuclease	peg.2577			
RNA polymerase sporulation specific sigma factor SigK	peg.2578|peg.2641	"Transcription_initiation,_bacterial_sigma_factors"	RNA Metabolism	
required for the chromosomal rearrangement that creates the sigK gene by excision of the skin element between spoIVCB and spoIIIC genes (stage IV sporulation)	peg.2579			
Arsenate reductase (EC 1.20.4.1)	peg.2580|peg.3286	Anaerobic_respiratory_reductases|Arsenic_resistance	Respiration|Virulence	rxn08171
Arsenical-resistance protein ACR3	peg.2581	Arsenic_resistance	Virulence	rxn05507|rxn05506
glyoxalase family protein	peg.2582			
regulator of the activity of phosphatase RapE	peg.2586			
alternate gene name: yqdF	peg.2590			
alternate gene name: yqdE	peg.2591			
cell wall hydrolase (minor autolysin)	peg.2592			
Probable holin	peg.2593			
Phage-like element PBSX protein xepA	peg.2594			
Phage-like element PBSX protein xkdV	peg.2597			
Phage-like element PBSX protein xkdU	peg.2599			
Phage-like element PBSX protein xkdT	peg.2600			
Phage-like element PBSX protein xkdS	peg.2601			
Phage-like element PBSX protein xkdR	peg.2602			
Phage-like element PBSX protein xkdQ	peg.2603			
Phage-like element PBSX protein xkdP	peg.2604			
Tail protein	peg.2605			
Phage-like element PBSX protein xkdN	peg.2606			
alternate gene name: yqcR	peg.2607			
Phage-like element PBSX protein xkdM	peg.2608			
Phage-like element PBSX protein xkdK	peg.2609|peg.2610			
Phage-like element PBSX protein xkdJ	peg.2611			
Phage-like element PBSX protein xkdI	peg.2612			
Phage-like element PBSX protein xkdH	peg.2613			
Phage-like element PBSX protein xkdG	peg.2616			
Phage-like element PBSX protein xkdF	peg.2617			
Phage-like element PBSX protein xkdE	peg.2620			
Terminase large subunit	peg.2621			
some similarities to phage-related terminase small subunit homolog yqaS	peg.2622			
DNA replication protein dnaC	peg.2628	DNA-replication	DNA Metabolism	
Recombinational DNA repair protein RecT (prophage associated)	peg.2630	"DNA_repair,_bacterial|Listeria_phi-A118-like_prophages"	DNA Metabolism|Virulence	
alternate gene name: yqcS	peg.2635			
Repressor (cro-like) [Bacteriophage A118]	peg.2636	Listeria_phi-A118-like_prophages	Virulence	
Putative HTH-type transcriptional regulator yqaE	peg.2637			
Phage-like element PBSX protein xkdA	peg.2640			
PsiE protein homolog	peg.2643			
sensory transduction protein kinase	peg.2644			
Glutathione-regulated potassium-efflux system ancillary protein KefF	peg.2649			
Molybdopterin biosynthesis MoeB protein	peg.2652			
rhodanese domain protein	peg.2655			
Mannose-6-phosphate isomerase	peg.2658			
regulation of the bltD operon	peg.2660			
spermine/spermidine acetyltransferase	peg.2662			rxn09264|rxn09949
potassium uptake	peg.2666			rxn05595
Cobalt-zinc-cadmium resistance protein CzcD	peg.2667	Cobalt-zinc-cadmium_resistance	Virulence	rxn05315|rxn05517
negative regulation of the glutamate synthase operon (gltAB)	peg.2669			
Branched-chain amino acid transport system carrier protein	peg.2671|peg.2963			rxn05244|rxn05669|rxn05243
branched-chain amino acid transport	peg.2672|peg.2673			rxn05244|rxn05669|rxn05243
negative regulation of the azlBCD operon	peg.2674			
Barstar-like protein ribonuclease (barnase) inhibitor	peg.2675			
isochorismatase family protein	peg.2678			
DinB family protein	peg.2680			
Aminoglycoside 6-adenylyltransferase (EC 2.7.7.-)	peg.2681			rxn00418
Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) homolog	peg.2682			rxn05323|rxn05448|rxn05441|rxn05328|rxn05445|rxn05446|rxn05435|rxn05326|rxn05437|rxn05324|rxn05464|rxn05322|rxn05439|rxn05443|rxn05434|rxn05442|rxn05436|rxn05447|rxn05438|rxn05327|rxn05450|rxn05440|rxn05444|rxn05433|rxn05325|rxn05449
Glutamate racemase (EC 5.1.1.3)	peg.2683|peg.2842	"Glutamine,_Glutamate,_Aspartate_and_Asparagine_Biosynthesis|Poly-gamma-glutamate_biosynthesis"	Amino Acids and Derivatives	rxn00193
Candidate zinc-binding lipoprotein ZinT	peg.2685			
RNA polymerase sigma factor SigZ	peg.2686	"Transcription_initiation,_bacterial_sigma_factors"	RNA Metabolism	
Citrate transporter	peg.2688			rxn05211
Regulatory protein CysB	peg.2689			
FldA protein	peg.2690			
Chitosanase precursor (EC 3.2.1.132)	peg.2691			
Membrane proteins related to metalloendopeptidases	peg.2694|peg.2695			
Spore coat protein F	peg.2698|peg.2700|peg.2701	Bsub-Spore-Coat	Cell Wall and Capsule	
alcohol dehydrogenase	peg.2699			
Levanase (EC 3.2.1.65)	peg.2706	Sucrose_Metabolism	Carbohydrates	
"PTS system, fructose-specific IID component (EC 2.7.1.69)"	peg.2707			rxn05560
"NtrC family Transcriptional regulator, ATPase domain"	peg.2711			
RNA polymerase sigma factor SigV	peg.2715	"Transcription_initiation,_bacterial_sigma_factors"	RNA Metabolism	
anti-sigma factor homolog yrhM	peg.2716			
Acyltransferase	peg.2717			
YRHH	peg.2721			
Formate efflux transporter (TC 2.A.44 family)	peg.2723	Fermentations:_Mixed_acid	Carbohydrates	rxn05559
Cystathionine gamma-lyase (EC 4.4.1.1)	peg.2728	Cysteine_Biosynthesis|Glycine_and_Serine_Utilization|Methionine_Biosynthesis|Methionine_Degradation	Amino Acids and Derivatives	rxn00742
Cystathionine beta-synthase (EC 4.2.1.22)	peg.2729	Cysteine_Biosynthesis|Glycine_and_Serine_Utilization|Methionine_Biosynthesis|Methionine_Degradation	Amino Acids and Derivatives	rxn00953
5'-methylthioadenosine nucleosidase (EC 3.2.2.16)	peg.2730	Menaquinone_Biosynthesis_via_Futalosine|Methionine_Salvage|Polyamine_Metabolism	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Amino Acids and Derivatives"	rxn00143|rxn01021
S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)	peg.2730	Methionine_Biosynthesis|Methionine_Degradation	Amino Acids and Derivatives	rxn00143|rxn01021
SAM-dependent methlytransferase YrrT	peg.2731	Methionine_Biosynthesis	Amino Acids and Derivatives	
low affinity penicillin binding protein	peg.2734			
Transcription elongation factor GreA	peg.2735	Transcription_factors_bacterial	RNA Metabolism	
Uridine kinase (EC 2.7.1.48) [C1]	peg.2736	pyrimidine_conversions	Nucleosides and Nucleotides	rxn01674|rxn00369|rxn01370|rxn01706|rxn00715|rxn00712|rxn01128|rxn01679|rxn01129|rxn01516|rxn00709|rxn00368|rxn00365|rxn01705|rxn01515|rxn00713|rxn00707|rxn01510
"peptidase, U32 family large subunit [C1]"	peg.2737			
"peptidase, U32 family small subunit [C1]"	peg.2738			
O-methyltransferase family protein [C1]	peg.2739			
COG1559 protein YceG like	peg.2740	tRNA_modification_Bacteria	RNA Metabolism	
Ortholog of S. aureus MRSA252 (BX571856) SAR1694	peg.2741			
Putative Holliday junction resolvase (EC 3.1.-.-)	peg.2742			
Alanyl-tRNA synthetase (EC 6.1.1.7)	peg.2743	tRNA_aminoacylation	Protein Metabolism	rxn05296
UPF0118 membrane protein YrrI	peg.2744|peg.3183			
Glutamine transport ATP-binding protein glnQ (TC 3.A.1.3.2)	peg.2745	ABC_transporter_glutamine_(TC_3.A.1.3.2)	Membrane Transport	rxn05155
"Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)"	peg.2746	ABC_transporter_glutamine_(TC_3.A.1.3.2)	Membrane Transport	rxn05155
Glutamine transport system permease protein glnP (TC 3.A.1.3.2)	peg.2747|peg.2748	ABC_transporter_glutamine_(TC_3.A.1.3.2)	Membrane Transport	rxn05155
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)	peg.2750	DNA-replication	DNA Metabolism	
Tetratricopeptide repeat (TPR) family protein	peg.2751			
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	peg.2752	mnm5U34_biosynthesis_bacteria|tRNA_modification_Bacteria|tRNA_modification_yeast_mitochondrial	RNA Metabolism	rxn05295
Iron-sulfur cluster regulator IscR	peg.2755	Fe-S_cluster_assembly|Rrf2_family_transcriptional_regulators	"Cofactors, Vitamins, Prosthetic Groups, Pigments|RNA Metabolism"	
ATPase related to helicase subunit of the Holliday junction resolvase	peg.2756			
Putative activating enzyme (E1) of a ubiquitin-like protein	peg.2757			
Aspartyl-tRNA synthetase (EC 6.1.1.12)	peg.2758	Asp-tRNA(Asn)_transamidation|tRNA_aminoacylation	Protein Metabolism	rxn05296
Histidyl-tRNA synthetase (EC 6.1.1.21)	peg.2759	Histidine_Biosynthesis|tRNA_aminoacylation	Amino Acids and Derivatives|Protein Metabolism	rxn05296
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)	peg.2762	D-tyrosyl-tRNA(Tyr)_deacylase	Stress Response	
"GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I"	peg.2763			rxn00303
Adenine phosphoribosyltransferase (EC 2.4.2.7)	peg.2764	Purine_conversions	Nucleosides and Nucleotides	rxn00139
Single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-)	peg.2765	"DNA-replication|DNA_Repair_Base_Excision|DNA_repair,_bacterial_RecFOR_pathway"	DNA Metabolism	
TrkA C-terminal domain protein	peg.2767			
Protein-export membrane protein secD (TC 3.A.5.1.1)	peg.2768	General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)|HtrA_and_Sec_secretion	Protein Metabolism	
Protein-export membrane protein secF (TC 3.A.5.1.1)	peg.2768	General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)|HtrA_and_Sec_secretion	Protein Metabolism	
Preprotein translocase subunit YajC (TC 3.A.5.1.1)	peg.2773	General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)	Protein Metabolism	
tRNA-guanine transglycosylase (EC 2.4.2.29)	peg.2774	Queuosine-Archaeosine_Biosynthesis|tRNA_modification_Bacteria	RNA Metabolism	
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	peg.2775	Queuosine-Archaeosine_Biosynthesis|tRNA_modification_Bacteria	RNA Metabolism	
Holliday junction DNA helicase RuvB	peg.2776	DNA-replication	DNA Metabolism	
Holliday junction DNA helicase RuvA	peg.2777	DNA-replication	DNA Metabolism	
forespore regulator of the sigma-K checkpoint	peg.2778			
alpha-ketoglutarate permease	peg.2779			rxn05493
ABC transporter permease protein yrbE	peg.2780			
Toluene tolerance protein	peg.2780			
sodium/alanine symporter family protein	peg.2784			rxn05215
Sporulation cortex protein coxA	peg.2786			
YRBA protein	peg.2787			
Quinolinate synthetase (EC 4.1.99.-)	peg.2788	Cobalt-zinc-cadmium_resistance|NAD_and_NADP_cofactor_biosynthesis_global|NAD_regulation|Quinolinic_acid_and_its_derivatives|YgfZ	"Virulence|Cofactors, Vitamins, Prosthetic Groups, Pigments|Secondary Metabolism"	rxn02988
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	peg.2789	NAD_and_NADP_cofactor_biosynthesis_global|NAD_regulation	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02402
L-aspartate oxidase (EC 1.4.3.16)	peg.2790	NAD_and_NADP_cofactor_biosynthesis_global|NAD_regulation|YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00338
Probable cysteine desulfurase (EC 2.8.1.7) (NifS protein homolog)	peg.2791			
Transcriptional repressor for NAD biosynthesis in gram-positives	peg.2792	NAD_regulation	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Prephenate dehydratase (EC 4.2.1.51)	peg.2793	Chorismate_Synthesis|Phenylalanine_and_Tyrosine_Branches_from_Chorismate|Phenylalanine_synthesis	Amino Acids and Derivatives	rxn01000
Chorismate mutase (EC 5.4.99.5)	peg.2794	Chorismate_Synthesis|Phenylalanine_synthesis	Amino Acids and Derivatives	rxn01256
COG0536: GTP-binding protein Obg	peg.2795	Iojap|Universal_GTPases	Protein Metabolism	
Sporulation initiation phosphotransferase B (Spo0B)	peg.2796			
LSU ribosomal protein L27p	peg.2797	Iojap|Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
"putative ribosomal protein, YsxB-like"	peg.2798			
LSU ribosomal protein L21p	peg.2799	Iojap|Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
Stage IV sporulation pro-sigma-K processing enzyme (SpoIVFB)	peg.2800			
Stage IV sporulation protein FA (SpoIVFA)	peg.2801			
Septum site-determining protein MinD	peg.2802	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Septum site-determining protein MinC	peg.2803	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Rod shape-determining protein MreD	peg.2804	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Rod shape-determining protein MreC	peg.2805	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Rod shape-determining protein MreB	peg.2806	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
DNA repair protein RadC	peg.2807	"DNA_repair,_bacterial"	DNA Metabolism	
Septum formation protein Maf	peg.2808	Bacterial_Cell_Division|Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Stage II sporulation protein B	peg.2809			
"Late competence protein ComC, processing protease"	peg.2810	Gram_Positive_Competence|Late_competence|gram_plus_late_competence	DNA Metabolism	
Leader peptidase (Prepilin peptidase) (EC 3.4.23.43)	peg.2810	Type_IV_pilus	Virulence	
N-methyltransferase (EC 2.1.1.-)	peg.2810	Type_IV_pilus	Virulence	
Dihydrofolate synthase (EC 6.3.2.12)	peg.2811	Folate_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00689|rxn01603|rxn01210
Folylpolyglutamate synthase (EC 6.3.2.17)	peg.2811	Folate_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00689|rxn01603|rxn01210
Valyl-tRNA synthetase (EC 6.1.1.9)	peg.2812	tRNA_aminoacylation	Protein Metabolism	rxn05296
Stage VI sporulation protein D	peg.2814	Bsub-Spore-Coat	Cell Wall and Capsule	
Porphobilinogen synthase (EC 4.2.1.24)	peg.2816	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00029
Porphobilinogen deaminase (EC 2.5.1.61)	peg.2818	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00060
"HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase"	peg.2819	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Glutamyl-tRNA reductase (EC 1.2.1.70)	peg.2820	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn06591
GTP-binding protein EngB	peg.2822	Universal_GTPases	Protein Metabolism	
ATP-dependent protease La (EC 3.4.21.53) Type I	peg.2823	"Proteasome_bacterial|Proteolysis_in_bacteria,_ATP-dependent"	Protein Metabolism	
ATP-dependent protease La (EC 3.4.21.53) LonB Type I	peg.2824	Proteasome_bacterial	Protein Metabolism	
ATP-dependent Clp protease ATP-binding subunit ClpX	peg.2825	"Proteasome_bacterial|Proteolysis_in_bacteria,_ATP-dependent"	Protein Metabolism	
Cell division trigger factor (EC 5.2.1.8)	peg.2826	Bacterial_Cell_Division	Cell Division and Cell Cycle	
TPR repeat protein	peg.2827			
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	peg.2828	Branched-Chain_Amino_Acid_Biosynthesis|Leucine_Biosynthesis	Amino Acids and Derivatives	rxn02789|rxn02811
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	peg.2829	Branched-Chain_Amino_Acid_Biosynthesis|Leucine_Biosynthesis	Amino Acids and Derivatives	rxn02789|rxn02811
3-isopropylmalate dehydrogenase (EC 1.1.1.85)	peg.2830	Branched-Chain_Amino_Acid_Biosynthesis|Leucine_Biosynthesis	Amino Acids and Derivatives	rxn03062
2-isopropylmalate synthase (EC 2.3.3.13)	peg.2831	Branched-Chain_Amino_Acid_Biosynthesis|Leucine_Biosynthesis	Amino Acids and Derivatives	rxn00902
Ketol-acid reductoisomerase (EC 1.1.1.86)	peg.2832	Branched-Chain_Amino_Acid_Biosynthesis|Coenzyme_A_Biosynthesis	"Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn08764|rxn03436|rxn03068|rxn02186|rxn03435
Acetolactate synthase small subunit (EC 2.2.1.6)	peg.2833	"Acetoin,_butanediol_metabolism|Branched-Chain_Amino_Acid_Biosynthesis"	Carbohydrates|Amino Acids and Derivatives	rxn00011|rxn02185|rxn03194
Acetolactate synthase large subunit (EC 2.2.1.6)	peg.2834	"Acetoin,_butanediol_metabolism|Branched-Chain_Amino_Acid_Biosynthesis"	Carbohydrates|Amino Acids and Derivatives	rxn00011|rxn02185|rxn03194
VPS29-like phosphoesterase-related protein ynbC	peg.2838			
"Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)"	peg.2839	Heme_and_Siroheme_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn09012|rxn00513|rxn09011
Ribonuclease PH (EC 2.7.7.56)	peg.2840	tRNA_processing	RNA Metabolism	
"germination (cortex hydrolysis) and sporulation (stage II, multiple polar septa)"	peg.2841			
transcriptional regulator	peg.2843|peg.3618|peg.3761			
Major transcriptional regulator of spore coat formation GerE	peg.2844			
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	peg.2846	Serine-glyoxylate_cycle|Succinate_dehydrogenase|TCA_Cycle|YgfZ	"Carbohydrates|Respiration|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00288
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	peg.2847	Serine-glyoxylate_cycle|Succinate_dehydrogenase|TCA_Cycle	Carbohydrates|Respiration	rxn00288
Succinate dehydrogenase cytochrome b558 subunit	peg.2848	Succinate_dehydrogenase	Respiration	rxn00288
aspartokinase II attenuator	peg.2851			
Excinuclease ABC subunit C	peg.2852	"DNA_repair,_UvrABC_system"	DNA Metabolism	
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)	peg.2854	L-Arabinose_utilization	Carbohydrates	rxn09988
"Electron transfer flavoprotein, alpha subunit"	peg.2855	Acetyl-CoA_fermentation_to_Butyrate	Carbohydrates	
"Electron transfer flavoprotein, beta subunit"	peg.2856	Acetyl-CoA_fermentation_to_Butyrate|Hemin_transport_system	Carbohydrates|Virulence	
"Fatty acid degradation regulator YsiA, TetR family"	peg.2858			
DUF350 domain-containing protein	peg.2860			
Recombination inhibitory protein MutS2	peg.2861	"DNA_repair,_bacterial_MutL-MutS_system"	DNA Metabolism	
DNA polymerase X family	peg.2862			
Possible colicin V production protein	peg.2863			
Z-ring-associated protein	peg.2864			
Ribonuclease HIII (EC 3.1.26.4)	peg.2865	Ribonuclease_H	RNA Metabolism	
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	peg.2866	tRNA_aminoacylation	Protein Metabolism	rxn05296
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	peg.2867	tRNA_aminoacylation	Protein Metabolism	rxn05296
SpoU rRNA Methylase family protein	peg.2868			
Predicted glycolate dehydrogenase regulator	peg.2870	"Glycolate,_glyoxylate_interconversions"	Carbohydrates	
"Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD"	peg.2871	"Glycolate,_glyoxylate_interconversions|Photorespiration_(oxidative_C2_cycle)"	Carbohydrates	rxn00333
Similar to glycolate dehydrogenase iron-sulfur subunit GlcF	peg.2872	"Glycolate,_glyoxylate_interconversions"	Carbohydrates	rxn00333
Carbon starvation protein A	peg.2874			
Alpha-N-arabinofuranosidase (EC 3.2.1.55)	peg.2875	L-Arabinose_utilization	Carbohydrates	rxn09988
"alpha-arabinosides ABC transport system, permease protein araQ"	peg.2876	L-Arabinose_utilization	Carbohydrates	rxn05173
"alpha-arabinosides ABC transport system, permease protein araP"	peg.2877	L-Arabinose_utilization	Carbohydrates	rxn05173
"alpha-arabinosides ABC transport system, substrate-binding protein araN"	peg.2878	L-Arabinose_utilization	Carbohydrates	rxn05173
Arabinose operon protein araM	peg.2879	L-Arabinose_utilization	Carbohydrates	
Arabinose operon protein araL	peg.2880	L-Arabinose_utilization	Carbohydrates	
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	peg.2881	L-Arabinose_utilization|L-ascorbate_utilization_(and_related_gene_clusters)	Carbohydrates	rxn04082
Ribulokinase (EC 2.7.1.16)	peg.2882	L-Arabinose_utilization	Carbohydrates	rxn01763|rxn01114
L-arabinose isomerase (EC 5.3.1.4)	peg.2883	L-Arabinose_utilization	Carbohydrates	rxn01292
"Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)"	peg.2884	L-Arabinose_utilization	Carbohydrates	
"endo-1,4-beta-glucanase"	peg.2885			
LSU ribosomal protein L20p	peg.2888	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
LSU ribosomal protein L35p	peg.2889	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
Translation initiation factor 3	peg.2890	Translation_factors_bacterial	Protein Metabolism	
LrgA-associated membrane protein LrgB	peg.2893	Murein_hydrolase_regulation_and_cell_death	Cell Division and Cell Cycle	
Antiholin-like protein LrgA	peg.2894	Murein_hydrolase_regulation_and_cell_death	Cell Division and Cell Cycle	
Autolysis response regulater LytR	peg.2895	Murein_hydrolase_regulation_and_cell_death	Cell Division and Cell Cycle	
Autolysis histidine kinase LytS	peg.2896	Murein_hydrolase_regulation_and_cell_death	Cell Division and Cell Cycle	
2-haloalkanoic acid dehalogenase (EC 3.8.1.2)	peg.2897			rxn03599
Threonyl-tRNA synthetase (EC 6.1.1.3)	peg.2898|peg.3762	tRNA_aminoacylation	Protein Metabolism	rxn05296
CONSERVED MEMBRANE PROTEIN	peg.2900			
Helicase loader DnaI	peg.2901	DNA-replication	DNA Metabolism	rxn05294
Helicase loader DnaB	peg.2902			rxn05294
Ribonucleotide reductase transcriptional regulator NrdR	peg.2903			
"S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B"	peg.2904	Polyamine_Metabolism	Amino Acids and Derivatives	rxn00127
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)	peg.2905	Calvin-Benson_cycle|Glycolysis_and_Gluconeogenesis|Redox-dependent_regulation_of_nucleus_processes	Carbohydrates|Stress Response	rxn00782
"oxidoreductase of aldo/keto reductase family, subgroup 1"	peg.2908|peg.3346	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	
Dephospho-CoA kinase (EC 2.7.1.24)	peg.2909	Coenzyme_A_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00100
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)	peg.2911	DNA_Repair_Base_Excision	DNA Metabolism	
Phosphate regulon sensor protein PhoR (EC 2.7.3.-)	peg.2913			
Putative response regulator	peg.2914			
Malate dehydrogenase (EC 1.1.1.37)	peg.2915	Glyoxylate_bypass|Serine-glyoxylate_cycle|TCA_Cycle	Carbohydrates	rxn00248
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	peg.2916	TCA_Cycle	Carbohydrates	rxn01387|rxn00199
FxsA protein	peg.2920			
Pyruvate kinase (EC 2.7.1.40)	peg.2921	"Entner-Doudoroff_Pathway|Fermentations:_Mixed_acid|Glycerate_metabolism|Glycolysis_and_Gluconeogenesis|Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes|Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	rxn00148
6-phosphofructokinase (EC 2.7.1.11)	peg.2922	"D-Tagatose_and_Galactitol_Utilization|Glycolysis_and_Gluconeogenesis|Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes|Hexitol_degradation|N-Acetyl-Galactosamine_and_Galactosamine_Utilization"	Carbohydrates	rxn01343|rxn02314|rxn00545
NADP-dependent malic enzyme (EC 1.1.1.40)	peg.2925	"Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	rxn00161
"FIG002194: Phosphoesterase, DHH family protein"	peg.2928			
FIG012217: hypothetical Membrane Spanning Protein	peg.2929			
FIG009534: Cytosolic protein containing multiple CBS domains	peg.2930			
"N-acetyl-L,L-diaminopimelate deacetylase homolog (EC 3.5.1.18)"	peg.2932|peg.3952			rxn01973
"Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases"	peg.2934|peg.3957			
bacterial luciferase family protein	peg.2936|peg.3815			
"Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1)"	peg.2937	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	rxn05164
Probable amino-acid ABC transporter permease protein ytmM	peg.2938|peg.2939			rxn05164
putative periplasmic binding transport protein	peg.2941			rxn05164
Argininosuccinate lyase (EC 4.3.2.1)	peg.2947	Arginine_Biosynthesis|Arginine_Biosynthesis_extended	Amino Acids and Derivatives	rxn00802
Argininosuccinate synthase (EC 6.3.4.5)	peg.2948	Arginine_Biosynthesis|Arginine_Biosynthesis_extended	Amino Acids and Derivatives	rxn01434
Molybdenum cofactor biosynthesis protein B	peg.2949	Molybdopterin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Acetate kinase (EC 2.7.2.1)	peg.2950	"Acetyl-CoA_pathway_of_CO2_fixation|Ethanolamine_utilization|Fermentations:_Lactate|Fermentations:_Mixed_acid|Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate|Threonine_anaerobic_catabolism_gene_cluster"	Carbohydrates|Amino Acids and Derivatives	rxn00225|rxn00985
Adenine-specific methyltransferase (EC 2.1.1.72)	peg.2951			
"Thiol peroxidase, Tpx-type (EC 1.11.1.15)"	peg.2952			
Sporulation protein YtfJ	peg.2953			
putative secreted protein	peg.2954			
Protease IV (EC 3.4.21.-)	peg.2956			
NAD kinase (EC 2.7.1.23) homolog	peg.2957			
Exoenzymes regulatory protein aepA precursor	peg.2958			
Acetyl-coenzyme A synthetase (EC 6.2.1.1)	peg.2959|peg.2971	"Ketoisovalerate_oxidoreductase|Methylcitrate_cycle|Protein_Acetylation_and_Deacetylation_in_Bacteria|Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"	Amino Acids and Derivatives|Carbohydrates|Protein Metabolism	rxn00175
Thiamine biosynthesis protein thiI	peg.2961	tRNA_modification_Archaea|tRNA_modification_Bacteria	RNA Metabolism	
Septation ring formation regulator EzrA	peg.2964			
Histidinol-phosphatase (EC 3.1.3.15)	peg.2965	Histidine_Biosynthesis	Amino Acids and Derivatives	rxn02160
GAF domain-containing proteins	peg.2967			
GGDEF family protein	peg.2968			
SSU ribosomal protein S4p (S9e)	peg.2969	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
Tyrosyl-tRNA synthetase (EC 6.1.1.1)	peg.2970|peg.3851	tRNA_aminoacylation	Protein Metabolism	rxn05296
"Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor"	peg.2972	"Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"	Carbohydrates	
NAD-independent protein deacetylase AcuC	peg.2974	"Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate"	Carbohydrates	
Catabolite control protein A	peg.2977			
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)	peg.2978	Chorismate_Synthesis|Common_Pathway_For_Synthesis_of_Aromatic_Compounds_(DAHP_synthase_to_chorismate)	Amino Acids and Derivatives	rxn01332|rxn01256
Chorismate mutase I (EC 5.4.99.5)	peg.2978	Chorismate_Synthesis|Phenylalanine_and_Tyrosine_Branches_from_Chorismate	Amino Acids and Derivatives	rxn01332|rxn01256
General stress protein	peg.2981			
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	peg.2982			rxn02286
tRNA binding domain protein	peg.2985			
Uncharacterized SAV1743 homolog	peg.2986			
Thioredoxin CDS_ID OB2235	peg.2987			
Deblocking aminopeptidase	peg.2989			
Glutamyl aminopeptidase (EC 3.4.11.7)	peg.2989			
NAD-dependent malic enzyme (EC 1.1.1.38)	peg.2991|peg.3712	"Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	rxn00159
tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33)	peg.2993	tRNA_modification_Bacteria	RNA Metabolism	
putative choline kinase involved in lipopolysaccharide biosynthesis	peg.2995			
Pullulanase (EC 3.2.1.41)	peg.2996			
2'-5' RNA ligase	peg.2999			
Xaa-His dipeptidase (EC 3.4.13.3)	peg.3001			
Protein ecsB	peg.3003			
"transcriptional regulator, DeoR family"	peg.3005			
Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)	peg.3006|peg.3007	rRNA_modification_Bacteria	RNA Metabolism	
"Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids"	peg.3008	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	
NAD(FAD)-utilizing dehydrogenases	peg.3009			
Glycine betaine transporter OpuD	peg.3010	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05505|rxn05579
Protein cse60	peg.3011			
YTEU	peg.3012			
putative oxidoreductase protein	peg.3013			
RhiN protein	peg.3015			
Sugar ABC transporter permease protein ycjP	peg.3020			
Biotin synthase (EC 2.8.1.6)	peg.3023	Biotin_biosynthesis|YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn08180
Dethiobiotin synthetase (EC 6.3.3.3)	peg.3024	Biotin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02277
8-amino-7-oxononanoate synthase (EC 2.3.1.47)	peg.3025	Biotin_biosynthesis|Sphingolipid_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Fatty Acids and Lipids"	rxn02297
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	peg.3026	Biotin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02312
Pimeloyl-CoA synthase (EC 6.2.1.14)	peg.3027	Biotin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02296
MSM (multiple sugar metabolism) operon regulatory protein	peg.3029	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	
"Multiple sugar ABC transporter, substrate-binding protein"	peg.3030|peg.3266	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	rxn05147|rxn05173|rxn05194|rxn05162|rxn05167|rxn05160
"Multiple sugar ABC transporter, membrane-spanning permease protein MsmF"	peg.3031|peg.3265	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	rxn05147|rxn05173|rxn05194|rxn05162|rxn05167|rxn05160
"Multiple sugar ABC transporter, membrane-spanning permease protein MsmG"	peg.3032|peg.3264	Fructooligosaccharides(FOS)_and_Raffinose_Utilization	Carbohydrates	rxn05147|rxn05173|rxn05194|rxn05162|rxn05167|rxn05160
Alpha-galactosidase (EC 3.2.1.22)	peg.3033	Fructooligosaccharides(FOS)_and_Raffinose_Utilization|Melibiose_Utilization	Carbohydrates	rxn00818|rxn03838|rxn00817|rxn02596
rhodanese-like domain protein	peg.3034			
Leucyl-tRNA synthetase (EC 6.1.1.4)	peg.3035	tRNA_aminoacylation	Protein Metabolism	rxn05296
Blue-light photoreceptor (Photoactive flavo- yellow protein) (Phototropin homolog)	peg.3037			
YttA	peg.3039			
Bacitracin export permease protein BceB	peg.3040	Bacitracin_Stress_Response	Stress Response	
Bacitracin export ATP-binding protein BceA	peg.3041	Bacitracin_Stress_Response	Stress Response	
Two-component sensor histidine kinase BceS	peg.3042	Bacitracin_Stress_Response	Stress Response	
Two-component response regulator BceR	peg.3043	Bacitracin_Stress_Response	Stress Response	
Methionine ABC transporter ATP-binding protein	peg.3045|peg.3280	Methionine_Biosynthesis|Methionine_Degradation	Amino Acids and Derivatives	rxn05219|rxn05183
YTRD	peg.3046			
YTRC	peg.3047			
Fe-S OXIDOREDUCTASE (1.8.-.-)	peg.3051			
Lysophospholipase (EC 3.1.1.5)	peg.3054	Triacylglycerol_metabolism	Fatty Acids and Lipids	
Monoglyceride lipase (EC 3.1.1.23)	peg.3054	Cannabinoid_biosynthesis|Triacylglycerol_metabolism	Secondary Metabolism|Fatty Acids and Lipids	
bacterial transferase family protein	peg.3055			
S-adenosylmethionine synthetase (EC 2.5.1.6)	peg.3058	Methionine_Biosynthesis|Methionine_Degradation|Quorum_Sensing:_Autoinducer-2_Synthesis	Amino Acids and Derivatives|Regulation and Cell signaling	rxn00126
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	peg.3059	"Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP|Serine-glyoxylate_cycle"	Carbohydrates	rxn00247
Dipeptidyl aminopeptidases/acylaminoacyl-peptidase	peg.3061			
Putative transporter	peg.3064			
similar to ABC transporter (permease)	peg.3065			
Low G+C gram positive nudix hydrolase YtkD (EC 3.6.-.-)	peg.3066	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	
Ferroxidase (EC 1.16.3.1)	peg.3068|peg.3304	Oxidative_stress	Stress Response	
Iron-binding ferritin-like antioxidant protein	peg.3068|peg.3304	Oxidative_stress	Stress Response	
Non-specific DNA-binding protein Dps	peg.3068|peg.3304	Oxidative_stress	Stress Response	
alternate gene name: yznA	peg.3069			
Autoinducer-2 production protein LuxS	peg.3070			rxn05958
S-ribosylhomocysteine lyase (EC 4.4.1.21)	peg.3070	Autoinducer_2_(AI-2)_transport_and_processing_(lsrACDBFGE_operon)|Methionine_Biosynthesis	Carbohydrates|Amino Acids and Derivatives	rxn05958
YidD	peg.3071			
Carbonic anhydrase (EC 4.2.1.1)	peg.3072|peg.3473	"CO2_uptake,_carboxysome|Carboxysome"	Carbohydrates	rxn00102
LSU ribosomal protein L31p	peg.3073|peg.3714	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	peg.3074|peg.3881	Cytochrome_c_oxidases_d@O_copy|Terminal_cytochrome_d_ubiquinol_oxidases|Terminal_cytochrome_oxidases	Respiration	rxn10045
"Manganese ABC transporter, inner membrane permease protein SitD"	peg.3077			rxn05149
"Manganese ABC transporter, inner membrane permease protein SitC"	peg.3078			rxn05149
"Manganese ABC transporter, ATP-binding protein SitB"	peg.3079			rxn05149
"Manganese ABC transporter, periplasmic-binding protein SitA"	peg.3080			rxn05149
O-succinylbenzoate-CoA synthase (EC 4.2.1.-)	peg.3081	Menaquinone_and_Phylloquinone_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02832
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)	peg.3082	Menaquinone_and_Phylloquinone_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02831
Naphthoate synthase (EC 4.1.3.36)	peg.3083	Menaquinone_and_Phylloquinone_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05024
"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)"	peg.3084	Menaquinone_and_Phylloquinone_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05023|rxn11703
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)	peg.3085	Menaquinone_and_Phylloquinone_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn00203|rxn04675
Menaquinone-specific isochorismate synthase (EC 5.4.4.2)	peg.3086	Menaquinone_and_Phylloquinone_Biosynthesis|Siderophore_enterobactin_biosynthesis_and_ferric_enterbactin_transport	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Virulence"	rxn01258
alternate gene name: yzwB	peg.3087			
UDP-glucose dehydrogenase (EC 1.1.1.22)	peg.3089|peg.3564|peg.3630	Lipid_A-Ara4N_pathway_(_Polymyxin_resistance_)|Streptococcal_Hyaluronic_Acid_Capsule|Sucrose_Metabolism|Teichuronic_acid_biosynthesis	Cell Wall and Capsule|Carbohydrates	rxn00211
UDP-glucuronate 5'-epimerase (EC 5.1.3.12)	peg.3090			rxn00295|rxn01010
"Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56)"	peg.3091|peg.3094	LOS_core_oligosaccharide_biosynthesis	Cell Wall and Capsule	
alternate gene name: ytbB	peg.3092			
Spore coat protein S	peg.3093|peg.3233	Bsub-Spore-Coat	Cell Wall and Capsule	
spore coat protein	peg.3095|peg.4059			
Glycogen phosphorylase (EC 2.4.1.1)	peg.3097	Glycogen_metabolism|Maltose_and_Maltodextrin_Utilization	Carbohydrates	rxn05740
"Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)"	peg.3098	Glycogen_metabolism	Carbohydrates	rxn08615
"Glycogen biosynthesis protein GlgD, glucose-1-phosphate adenylyltransferase family"	peg.3099	Glycogen_metabolism	Carbohydrates	rxn00695
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)	peg.3100	Glycogen_metabolism|Sucrose_Metabolism	Carbohydrates	rxn00695
"1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)"	peg.3101	Glycogen_metabolism|Trehalose_Biosynthesis	Carbohydrates	rxn09399
Substrate-specific component ThiT of thiamin ECF transporter	peg.3102	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
flotillin 1	peg.3104			
MOSC domain protein	peg.3107			
"Alcohol dehydrogenase GbsB (type III ), essential for the utilization of choline (EC 1.1.1.1)"	peg.3108	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn10062
Betaine aldehyde dehydrogenase (EC 1.2.1.8)	peg.3109	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn01868|rxn01867
Putative regulatory protein	peg.3110			
"Potassium uptake protein, integral membrane component, KtrA"	peg.3112			rxn05595
"Potassium uptake protein, integral membrane component, KtrB"	peg.3113			rxn05595
"N-acetylmuramoyl-L-alanine amidase, family 4"	peg.3115			rxn02875
YUBC protein	peg.3117			
Undecaprenyl-diphosphatase (EC 3.6.1.27)	peg.3118	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	rxn03901
Possible oxidoreductase	peg.3120			
L-rhamnose isomerase (EC 5.3.1.14)	peg.3121	L-rhamnose_utilization	Carbohydrates	rxn01761
L-rhamnose mutarotase	peg.3122	L-rhamnose_utilization	Carbohydrates	
Rhamnulokinase (EC 2.7.1.5)	peg.3123	L-rhamnose_utilization	Carbohydrates	rxn01390|rxn02161
"Transcriptional regulator of rhamnose utilization, DeoR family"	peg.3124	L-rhamnose_utilization	Carbohydrates	
Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)	peg.3125	L-rhamnose_utilization	Carbohydrates	rxn01053|rxn01621
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	peg.3125	L-rhamnose_utilization	Carbohydrates	rxn01053|rxn01621
chemotaxis deficiency toward glucose and alpha-methyl-glucoside	peg.3127			
"chemotaxis deficiency toward asparagine, glutamine and histidine"	peg.3129			
Protein-glutamine gamma-glutamyltransferase (EC 2.3.2.13)	peg.3130	Bacterial_motility:Gliding	Motility and Chemotaxis	
NovD	peg.3131			
Alpha-glucosidase (EC 3.2.1.20)	peg.3132	Maltose_and_Maltodextrin_Utilization	Carbohydrates	rxn00575|rxn00022
"Kef-type K+ transport system, predicted NAD-binding component"	peg.3135			
Glucose-6-phosphate isomerase (EC 5.3.1.9)	peg.3138	"Formaldehyde_assimilation:_Ribulose_monophosphate_pathway|Glycolysis_and_Gluconeogenesis|Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes|Sucrose_Metabolism"	Carbohydrates	rxn00558|rxn02380|rxn01977
NADH-dependent butanol dehydrogenase B (EC 1.1.1.-)	peg.3139	Butanol_Biosynthesis	Carbohydrates	rxn02527
NADH-dependent butanol dehydrogenase A (EC 1.1.1.-)	peg.3140	Butanol_Biosynthesis	Carbohydrates	rxn02527
DUF378 domain-containing protein	peg.3141			
General stress protein 13	peg.3142			
"N-acetyl-L,L-diaminopimelate aminotransferase homolog (EC 2.6.1.-)"	peg.3143			rxn03086
Alpha/beta hydrolase fold (EC 3.8.1.5)	peg.3145			rxn05023
DUF1871 domain-containing protein	peg.3146			
Putative aminotransferase	peg.3147			
Sporulation kinase B (EC 2.7.13.3)	peg.3148			
required for activation of KinB in the initiation of sporulation	peg.3149			
inhibition of the KinA pathway to sporulation	peg.3150			
Penicillin-binding protein 4 precursor (PBP 4)	peg.3152			
alternate gene name: yugD	peg.3153			
"Two-component sensor histidine kinase, malate (EC 2.7.3.-)"	peg.3155	"Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	
"Two-component response regulator, malate (EC 2.7.3.-)"	peg.3156	"Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	
"Unspecified monosaccharide ABC transport system, substrate-binding component"	peg.3157			rxn05147|rxn05173|rxn05194|rxn05162|rxn05167|rxn05160
"Unspecified monosaccharide ABC transport system, ATP-binding protein"	peg.3158			rxn05147|rxn05173|rxn05194|rxn05162|rxn05167|rxn05160
"Unspecified monosaccharide ABC transport system, permease component Ia (FIG025991)"	peg.3159			rxn05147|rxn05173|rxn05194|rxn05162|rxn05167|rxn05160
"Unspecified monosaccharide ABC transport system, permease component Ib (FIG143636)"	peg.3159			rxn05147|rxn05173|rxn05194|rxn05162|rxn05167|rxn05160
"Unspecified monosaccharide ABC transport system, permease component 2"	peg.3160			rxn05147|rxn05173|rxn05194|rxn05162|rxn05167|rxn05160
Na(+) H(+) antiporter subunit A (TC 2.A.63.1.2)	peg.3163	Sodium_Hydrogen_Antiporter	Membrane Transport	rxn05209
Na(+) H(+) antiporter subunit B (TC 2.A.63.1.2)	peg.3164	Sodium_Hydrogen_Antiporter	Membrane Transport	rxn05209
Na(+) H(+) antiporter subunit C (TC 2.A.63.1.2)	peg.3165	Sodium_Hydrogen_Antiporter	Membrane Transport	rxn05209
Na(+) H(+) antiporter subunit D (TC 2.A.63.1.2)	peg.3166	Sodium_Hydrogen_Antiporter	Membrane Transport	rxn05209
Na(+) H(+) antiporter subunit E (TC 2.A.63.1.2)	peg.3167	Sodium_Hydrogen_Antiporter	Membrane Transport	rxn05209
Na(+) H(+) antiporter subunit F (TC 2.A.63.1.2)	peg.3168	Sodium_Hydrogen_Antiporter	Membrane Transport	rxn05209
Na(+) H(+) antiporter subunit G (TC 2.A.63.1.2)	peg.3169	Sodium_Hydrogen_Antiporter	Membrane Transport	rxn05209
ComA operon protein 2	peg.3170			
"positive regulation of late competence genes and surfactin production (comS, srfA, rapA)"	peg.3171			
involved in early competence	peg.3172			
required for the development of genetic competence possibly by activating ComA through extracellular signaling of Spo0K	peg.3173			
regulation of late competence operon (comG) and surfactin expression (srfA)	peg.3174			
"hyperproduction of levansucrase and other extracellular degradative enzymes (aprE, nprE, amyE)"	peg.3175			
"alternate gene name: comB, yufA"	peg.3177			
Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	peg.3178	NAD_and_NADP_cofactor_biosynthesis_global|NAD_regulation|Redox-dependent_regulation_of_nucleus_processes	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Stress Response"	rxn01265
DUF1694 domain-containing protein	peg.3180			
Similar to proteins GerPF and GerPA	peg.3182			
Benzil reductase	peg.3187			
Bacteriophage SPP1 receptor	peg.3189			
Putative secretion accessory protein EsaA/YueB	peg.3189	ESAT-6_proteins_secretion_system_in_Firmicutes	Virulence	
"FtsK/SpoIIIE family protein, putative secretion system component EssC/YukA"	peg.3190|peg.3191	ESAT-6_proteins_secretion_system_in_Firmicutes	Virulence	
Putative secretion system component EssB/YukC	peg.3192	ESAT-6_proteins_secretion_system_in_Firmicutes	Virulence	
Putative secretion accessory protein EsaB/YukD	peg.3193	ESAT-6_proteins_secretion_system_in_Firmicutes	Virulence	
ESAT-6/Esx family secreted protein EsxA/YukE	peg.3194	ESAT-6_proteins_secretion_system_in_Firmicutes	Virulence	
Alanine dehydrogenase (EC 1.4.1.1)	peg.3196	Pyruvate_Alanine_Serine_Interconversions	Carbohydrates	rxn00278
alternate gene name: yukI	peg.3197			
nonribosomal peptide synthetase DhbF	peg.3201			
Enterobactin synthetase component F (EC 2.7.7.-)	peg.3202	Siderophore_enterobactin_biosynthesis_and_ferric_enterbactin_transport	Virulence	
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis	peg.3203	"Chorismate:_Intermediate_for_synthesis_of_PAPA_antibiotics,_PABA,_anthranilate,_3-hydroxyanthranilate_and_more.|Iron_acquisition_in_Vibrio"	Amino Acids and Derivatives|Virulence	rxn02177
"2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58)"	peg.3204	Iron_acquisition_in_Vibrio|Siderophore_enterobactin_biosynthesis_and_ferric_enterbactin_transport	Virulence	rxn01093
Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis	peg.3205	"Chorismate:_Intermediate_for_synthesis_of_PAPA_antibiotics,_PABA,_anthranilate,_3-hydroxyanthranilate_and_more.|Iron_acquisition_in_Vibrio"	Amino Acids and Derivatives|Virulence	rxn01258
"2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28)"	peg.3206	Iron_acquisition_in_Vibrio|Siderophore_enterobactin_biosynthesis_and_ferric_enterbactin_transport	Virulence	rxn01094
IroE protein	peg.3207			
Sulfite oxidase and related enzymes	peg.3208			
Na+/H+ antiporter family protein	peg.3210			
Cytosol aminopeptidase PepA (EC 3.4.11.1)	peg.3211	Dehydrogenase_complexes|Protein_degradation	Carbohydrates|Protein Metabolism	
YUIB protein	peg.3214			
GMP reductase (EC 1.7.1.7)	peg.3219	Purine_conversions	Nucleosides and Nucleotides	rxn00837
negative regulation of sporulation and degradative enzyme genes	peg.3220			
"negative regulation of sporulation, septation and degradative enzyme genes (aprE, nprE, phoA, sacB)"	peg.3221			
probable iron binding protein from the HesB_IscA_SufA family	peg.3222	Fe-S_cluster_assembly	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Diaminopimelate epimerase (EC 5.1.1.7)	peg.3223	Lysine_Biosynthesis_DAP_Pathway	Amino Acids and Derivatives	rxn01974
Nucleoside permease NupC	peg.3224|peg.3946	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	rxn05198|rxn05199|rxn05200|rxn05205
NifU-like protein	peg.3228			
Probable peptidase yuxL (EC 3.4.21.-)	peg.3229			
Homoserine kinase (EC 2.7.1.39)	peg.3230	Methionine_Biosynthesis|Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	rxn01300
Threonine synthase (EC 4.2.3.1)	peg.3231	Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	rxn01069
Homoserine dehydrogenase (EC 1.1.1.3)	peg.3232	Methionine_Biosynthesis|Threonine_and_Homoserine_Biosynthesis	Amino Acids and Derivatives	rxn01302|rxn01301
Hypothetical NagD-like phosphatase	peg.3235			
Lipoate synthase	peg.3239	Lipoic_acid_metabolism|YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
"Cell wall endopeptidase, family M23/M37"	peg.3240			
DUF1805 domain-containing protein	peg.3242			
UDP-sugar hydrolase (EC 3.6.1.45)	peg.3243			rxn00212|rxn09348|rxn09355|rxn09340|rxn09341
COG1801: Uncharacterized conserved protein	peg.3245			
Allantoinase (EC 3.5.2.5)	peg.3247			rxn01748
Xanthine permease	peg.3249|peg.3250|peg.3799			rxn05201|rxn05202|rxn05636
Uricase (EC 1.7.3.3)	peg.3251			rxn01523
Transthyretin-like protein pucM	peg.3252			
Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)	peg.3253			rxn01297|rxn01522
"Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)"	peg.3254			rxn01297|rxn01522
"Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)"	peg.3255			rxn01297|rxn01522
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)	peg.3258	Photorespiration_(oxidative_C2_cycle)|Pyruvate_Alanine_Serine_Interconversions|Serine-glyoxylate_cycle	Carbohydrates	rxn00272|rxn00422
Serine--pyruvate aminotransferase (EC 2.6.1.51)	peg.3258	Serine-glyoxylate_cycle	Carbohydrates	rxn00272|rxn00422
Allantoate amidohydrolase (EC 3.5.3.9)	peg.3259			rxn01747|rxn03842
Extracellular ribonuclease precursor (EC 3.1.-.-)	peg.3260			
"Multiple sugar ABC transporter, ATP-binding protein"	peg.3261|peg.3886	Fructooligosaccharides(FOS)_and_Raffinose_Utilization|Maltose_and_Maltodextrin_Utilization	Carbohydrates	rxn05147|rxn05173|rxn05194|rxn05162|rxn05167|rxn05160
kinase (ribokinase family)	peg.3263			
Fructoselysine 6-phosphate deglycase (EC 3.5.-.-)	peg.3267			rxn11511
Endo/excinuclease amino terminal domain protein	peg.3268			
D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	peg.3269	"Proline,_4-hydroxyproline_uptake_and_utilization|Pyruvate_Alanine_Serine_Interconversions|Respiratory_dehydrogenases_1"	Amino Acids and Derivatives|Carbohydrates|Respiration	
Iron-sulfur cluster assembly protein SufB	peg.3272	Fe-S_cluster_assembly|Staphylococcal_phi-Mu50B-like_prophages|tRNA_modification_Bacteria	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Virulence|RNA Metabolism"	
Iron-sulfur cluster assembly scaffold protein IscU	peg.3273	Fe-S_cluster_assembly|Wyeosine-MimG_Biosynthesis|tRNA_modification_Archaea|tRNA_modification_Bacteria	"Cofactors, Vitamins, Prosthetic Groups, Pigments|RNA Metabolism"	
Iron-sulfur cluster assembly protein SufD	peg.3275	Fe-S_cluster_assembly|tRNA_modification_Bacteria	"Cofactors, Vitamins, Prosthetic Groups, Pigments|RNA Metabolism"	
Iron-sulfur cluster assembly ATPase protein SufC	peg.3276	Fe-S_cluster_assembly|YgfZ|tRNA_modification_Bacteria	"Cofactors, Vitamins, Prosthetic Groups, Pigments|RNA Metabolism"	
YURZ protein	peg.3277			
Methionine ABC transporter permease protein	peg.3279	Methionine_Biosynthesis|Methionine_Degradation	Amino Acids and Derivatives	rxn05219|rxn05183
"Toprim, The Topoisomerase- primase domain- a nucleotidyl transferase/hydrolase domain"	peg.3283			
Glycine cleavage system H protein	peg.3285	Glycine_and_Serine_Utilization|Glycine_cleavage_system|Photorespiration_(oxidative_C2_cycle)	Amino Acids and Derivatives|Carbohydrates	rxn00908
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	peg.3289	Isobutyryl-CoA_to_Propionyl-CoA_Module|Isoleucine_degradation	Carbohydrates|Amino Acids and Derivatives	rxn01451|rxn02933|rxn03239|rxn03246|rxn04750|rxn03242|rxn03244|rxn03249|rxn06777
Spore coat F-containing protein	peg.3291			
probable tautomerase	peg.3294			
Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1)	peg.3299	ABC_transporter_iron(III)_dicitrate_(TC_3.A.1.14.1)	Membrane Transport	rxn05557
Oligoendopeptidase F	peg.3301			
serine protease	peg.3305			
Transcriptional regulatory protein cssR	peg.3307			
Fumarate hydratase class II (EC 4.2.1.2)	peg.3310	TCA_Cycle	Carbohydrates	rxn00799
"Spore germination protein GerAA, germination response to L-alanine and related amino acids (earliest stage)"	peg.3311			
"Spore germination protein GerAB, germination response to L-alanine and related amino acids (earliest stage)"	peg.3312			
"Spore germination protein GerAC, germination response to L-alanine and related amino acids (earliest stage)"	peg.3313			
Response regulator LiaR	peg.3314	Bacitracin_Stress_Response	Stress Response	
Sensor histidine kinase LiaS	peg.3315	Bacitracin_Stress_Response	Stress Response	
Transporter LiaF	peg.3316	Bacitracin_Stress_Response	Stress Response	
Conserved protein LiaG in B. subtilis in Lia cluster	peg.3317	Bacitracin_Stress_Response	Stress Response	
"Protein LiaH, similar to phage shock protein A"	peg.3318	Bacitracin_Stress_Response	Stress Response	
Protein LiaI	peg.3319	Bacitracin_Stress_Response	Stress Response	
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)	peg.3321	Coenzyme_B12_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Adenosylcobinamide amidohydrolase (EC 3.5.1.90)	peg.3322	Coenzyme_B12_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05187|rxn05515
"Vitamin B12 ABC transporter, ATPase component BtuD"	peg.3322	Coenzyme_B12_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05187|rxn05515
"Vitamin B12 ABC transporter, permease component BtuC"	peg.3323	Coenzyme_B12_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05187|rxn05515
"Vitamin B12 ABC transporter, B12-binding component BtuF"	peg.3324	Coenzyme_B12_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05187|rxn05515
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	peg.3325|peg.3365|peg.3989			
Gluconolactonase (EC 3.1.1.17)	peg.3326	Entner-Doudoroff_Pathway	Carbohydrates	rxn01107
RNA polymerase sigma factor	peg.3329	Regulation_of_Oxidative_Stress_Response	Stress Response	
ABC transporter permease protein	peg.3332			
Ferrichrome transport system permease protein fhuG	peg.3337	ABC_transporter_ferrichrome_(TC_3.A.1.14.3)	Membrane Transport	rxn05188|rxn05558
Ferrichrome transport system permease protein fhuB (TC 3.A.1.14.3)	peg.3338	ABC_transporter_ferrichrome_(TC_3.A.1.14.3)|Iron_acquisition_in_Vibrio	Membrane Transport|Virulence	rxn05188|rxn05558
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)	peg.3339	ABC_transporter_ferrichrome_(TC_3.A.1.14.3)|Iron_acquisition_in_Vibrio	Membrane Transport|Virulence	rxn05188|rxn05558
Arginine/ornithine antiporter ArcD	peg.3340	Arginine_Deiminase_Pathway|Arginine_and_Ornithine_Degradation|Polyamine_Metabolism	Amino Acids and Derivatives	rxn05303|rxn05628
LexA regulated	peg.3341			
Predicted molybdate-responsive regulator YvgK in bacilli	peg.3343			rxn05619
"Molybdenum ABC transporter, periplasmic molybdenum-binding protein modA (TC 3.A.1.8.1)"	peg.3344	ABC_transporter_molybdenum_(TC_3.A.1.8.1)|ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	rxn05619
Molybdenum transport system permease protein modB (TC 3.A.1.8.1)	peg.3345	ABC_transporter_molybdenum_(TC_3.A.1.8.1)|ABC_transporter_tungstate_(TC_3.A.1.6.2)	Membrane Transport	rxn05619
Na+:H+ antiporter	peg.3348			
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	peg.3349	Cysteine_Biosynthesis|Inorganic_Sulfur_Assimilation|Sulfate_assimilation|Superpathway_of_cysteine_biosynthesis	Amino Acids and Derivatives|Sulfur Metabolism	rxn00623
Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)	peg.3350	Cysteine_Biosynthesis|Inorganic_Sulfur_Assimilation|Sulfate_assimilation|Superpathway_of_cysteine_biosynthesis	Amino Acids and Derivatives|Sulfur Metabolism	rxn00623
ATP-dependent DNA helicase rep (EC 3.6.1.-)	peg.3351			
"Disulfide bond formation protein BdbC, competence-related"	peg.3353			
"Disulfide bond formation protein BdbD, competence-related"	peg.3354			
Copper(I) chaperone copZ	peg.3357			
YVGZ protein	peg.3358			
Ethidium bromide-methyl viologen resistance protein EmrE	peg.3363			
tmRNA-binding protein SmpB	peg.3366	Staphylococcal_pathogenicity_islands_SaPI|Trans-translation_by_stalled_ribosomes|Translation_factors_bacterial	Virulence|Protein Metabolism	
Ribonuclease R (EC 3.1.-.-)	peg.3367	"RNA_processing_and_degradation,_bacterial"	RNA Metabolism	
Preprotein translocase subunit SecG (TC 3.A.5.1.1)	peg.3369	General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)|HtrA_and_Sec_secretion|Murein_hydrolase_regulation_and_cell_death	Protein Metabolism|Cell Division and Cell Cycle	
hydrolase	peg.3370			
YVAN protein	peg.3372			
YVAO protein	peg.3373			
"Choline ABC transport system, permease protein OpuBD"	peg.3376	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05184|rxn05159
"Choline ABC transport system, choline-binding protein OpuBC"	peg.3377	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05184|rxn05159
"Choline ABC transport system, permease protein OpuBB"	peg.3378	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05184|rxn05159
"Choline ABC transport system, ATP-binding protein OpuBA"	peg.3379	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05184|rxn05159
portion of orf between proU operon and 181 operon	peg.3380|peg.3390			
Transcriptional repressor sdpR	peg.3385			
"Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD"	peg.3386	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05550|rxn05184|rxn05180|rxn05159
"Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC"	peg.3387	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05550|rxn05184|rxn05180|rxn05159
"Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB"	peg.3388	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05550|rxn05184|rxn05180|rxn05159
"Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA"	peg.3389	Choline_and_Betaine_Uptake_and_Betaine_Biosynthesis	Amino Acids and Derivatives	rxn05550|rxn05184|rxn05180|rxn05159
Multiple antibiotic resistance protein marC	peg.3391			
Enolase (EC 4.2.1.11)	peg.3396	"Dehydrogenase_complexes|Entner-Doudoroff_Pathway|Glycolysis_and_Gluconeogenesis|Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes|Serine-glyoxylate_cycle"	Carbohydrates	rxn00459
"2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)"	peg.3397	"Entner-Doudoroff_Pathway|Glycolysis_and_Gluconeogenesis|Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes"	Carbohydrates	rxn01106
Triosephosphate isomerase (EC 5.3.1.1)	peg.3398	"Calvin-Benson_cycle|Dihydroxyacetone_kinases|Glycolysis_and_Gluconeogenesis|Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes|MLST"	Carbohydrates|Virulence	rxn00747
Phosphoglycerate kinase (EC 2.7.2.3)	peg.3399	"Calvin-Benson_cycle|Entner-Doudoroff_Pathway|Glycolysis_and_Gluconeogenesis|Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes|YgfZ"	"Carbohydrates|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn01100
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	peg.3400	Calvin-Benson_cycle|Entner-Doudoroff_Pathway|Glycolysis_and_Gluconeogenesis|Pyridoxin_(Vitamin_B6)_Biosynthesis|Redox-dependent_regulation_of_nucleus_processes	"Carbohydrates|Cofactors, Vitamins, Prosthetic Groups, Pigments|Stress Response"	rxn00781
Central glycolytic genes regulator	peg.3401			
Arabinose-proton symporter	peg.3402	L-Arabinose_utilization	Carbohydrates	rxn05566|rxn05500|rxn05671
Transcriptional repressor of the arabinose operon	peg.3403	L-Arabinose_utilization	Carbohydrates	
"Putative peptidoglycan hydrolase YvbX, NOT involved in spore germination"	peg.3408			
"Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF"	peg.3410	Lactate_utilization	Carbohydrates	
"Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE"	peg.3411	Lactate_utilization	Carbohydrates	
putative hydrolase	peg.3416			
"Arabinogalactan endo-1,4-beta-galactosidase precursor (EC 3.2.1.89)"	peg.3418			
"Maltose/maltodextrin ABC transporter, permease protein MalG"	peg.3420|peg.3465	Maltose_and_Maltodextrin_Utilization	Carbohydrates	
"Maltose/maltodextrin ABC transporter, permease protein MalF"	peg.3421|peg.3466	Maltose_and_Maltodextrin_Utilization	Carbohydrates	
"Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE"	peg.3422|peg.3467	Alpha-Amylase_locus_in_Streptocococcus|Maltose_and_Maltodextrin_Utilization	Carbohydrates	
negative regulation of the beta-galactosidase gene (lacA)	peg.3423			
"Lactate-responsive regulator LldR in Firmicutes, GntR family"	peg.3424	Lactate_utilization	Carbohydrates	
Polysaccharide polymerization protein	peg.3428			
4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase	peg.3429	N-linked_Glycosylation_in_Bacteria	Virulence	
Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-)	peg.3431	N-linked_Glycosylation_in_Bacteria	Virulence	
"glycosyl transferase, family 2"	peg.3434			
COG5039: Exopolysaccharide biosynthesis protein	peg.3435|peg.4009			
similar to spore coat polysaccharide biosynthesis	peg.3436			
capsular polysaccharide biosynthesis protein	peg.3437	Rhamnose_containing_glycans|Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	
glycosyltransferase	peg.3439			
Capsular polysaccharide biosynthesis	peg.3441			
capsular polysaccharide biosynthesis	peg.3442|peg.3443			
"Slr, positive regulator of the extracellular matrix biosynthesis operon yqxM-sipW-tasA"	peg.3444			
para-nitrobenzyl esterase (intracellular esterase B)	peg.3445			
ferulate decarboxylase	peg.3446			
amino acid racemase	peg.3449			
Penicillin-binding protein 4	peg.3450			
Levansucrase (EC 2.4.1.10)	peg.3451	Sucrose_Metabolism	Carbohydrates	
Levanase	peg.3452			
Teg protein	peg.3459			
ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	peg.3460	"Proteasome_bacterial|Proteolysis_in_bacteria,_ATP-dependent"	Protein Metabolism	
Beta-phosphoglucomutase (EC 5.4.2.6)	peg.3461	Maltose_and_Maltodextrin_Utilization|Trehalose_Uptake_and_Utilization	Carbohydrates	rxn01967
Neopullulanase (EC 3.2.1.135)	peg.3462|peg.3468	Maltose_and_Maltodextrin_Utilization	Carbohydrates	rxn01259|rxn09989|rxn05746
Maltose phosphorylase (EC 2.4.1.8)	peg.3463	Maltose_and_Maltodextrin_Utilization	Carbohydrates	rxn01966|rxn01132
Maltodextrose utilization protein MalA	peg.3464	Maltose_and_Maltodextrin_Utilization	Carbohydrates	
"Maltose operon transcriptional repressor MalR, LacI family"	peg.3469	Maltose_and_Maltodextrin_Utilization	Carbohydrates	
Lysine decarboxylase family	peg.3470			rxn00322
MazG related NTP pyrophosphohydrolase	peg.3471			
Glyoxylate reductase (EC 1.1.1.26)	peg.3474	"Glycolate,_glyoxylate_interconversions"	Carbohydrates	rxn00512|rxn00324
Glyoxylate reductase (EC 1.1.1.79)	peg.3474	"Glycolate,_glyoxylate_interconversions"	Carbohydrates	rxn00512|rxn00324
ABC transporter permease protein YvcS	peg.3475|peg.3968	Bacitracin_Stress_Response	Stress Response	
ABC transporter ATP-binding protein YvcR	peg.3476|peg.3969	Bacitracin_Stress_Response	Stress Response	
Two-component sensor kinase YvcQ	peg.3477|peg.3970	Bacitracin_Stress_Response	Stress Response	
Two-component response regulator YvcP	peg.3478|peg.3971	Bacitracin_Stress_Response	Stress Response	
N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118)	peg.3479			rxn02825
Catabolite repression HPr-like protein Crh	peg.3480			
"Hypothetical ATP-binding protein UPF0042, contains P-loop"	peg.3483			
"Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)"	peg.3484	Nudix_proteins_(nucleoside_triphosphate_hydrolases)	Nucleosides and Nucleotides	
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	peg.3492	Histidine_Biosynthesis|YgfZ	"Amino Acids and Derivatives|Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn02834|rxn02835
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	peg.3492	Histidine_Biosynthesis	Amino Acids and Derivatives	rxn02834|rxn02835
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	peg.3493	Histidine_Biosynthesis	Amino Acids and Derivatives	rxn03135
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	peg.3494	Histidine_Biosynthesis|Tryptophan_synthesis	Amino Acids and Derivatives	rxn03175
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	peg.3495	Histidine_Biosynthesis	Amino Acids and Derivatives	rxn03135
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	peg.3496	Histidine_Biosynthesis	Amino Acids and Derivatives	rxn02473
Histidinol dehydrogenase (EC 1.1.1.23)	peg.3497	Histidine_Biosynthesis	Amino Acids and Derivatives	rxn00863|rxn02159
ATP phosphoribosyltransferase catalytic subunit (EC 2.4.2.17)	peg.3498	Histidine_Biosynthesis	Amino Acids and Derivatives	rxn00789
ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)	peg.3499	Histidine_Biosynthesis	Amino Acids and Derivatives	rxn00789
HrpW protein	peg.3501			
bacterial transferase hexapeptide domain protein	peg.3502			
Inorganic pyrophospatase PpaX	peg.3503			rxn00001
Nucleoside binding-domain containing protein	peg.3504			
Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)	peg.3505	Lipoprotein_Biosynthesis	Protein Metabolism	
HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-)	peg.3506	Mannitol_Utilization	Carbohydrates	
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	peg.3507	Chitin_and_N-acetylglucosamine_utilization|Sialic_Acid_Metabolism	Carbohydrates|Cell Wall and Capsule	rxn01484
"Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family"	peg.3509	Chitin_and_N-acetylglucosamine_utilization	Carbohydrates	
cytochrome P450-like enzyme	peg.3512			
YVMC	peg.3513			
Flagellin	peg.3521	Motility_of_Campylobacter	Motility and Chemotaxis	
Excinuclease ABC subunit A	peg.3522	"DNA_repair,_UvrABC_system"	DNA Metabolism	
Excinuclease ABC subunit B	peg.3523	"DNA_repair,_UvrABC_system"	DNA Metabolism	
"Pyruvate-utilizing enzyme, similar to phosphoenolpyruvate synthase"	peg.3525	"Glycolysis_and_Gluconeogenesis|Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	
Swarming motility protein SwrA	peg.3529			
carboxyl-terminal protease	peg.3530			
Cell division protein FtsX	peg.3531	Bacterial_Cell_Division|Bacterial_motility:Gliding|General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)	Cell Division and Cell Cycle|Motility and Chemotaxis|Protein Metabolism	
"Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)"	peg.3532	Bacterial_Cell_Division|General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)	Cell Division and Cell Cycle|Protein Metabolism	
cytochrome c551	peg.3533			
Peptide chain release factor 2	peg.3535	Programmed_frameshift|Translation_factors_bacterial	Protein Metabolism	
programmed frameshift-containing	peg.3535	Programmed_frameshift	Protein Metabolism	
Peptide chain release factor 2 unshifted fragment	peg.4116	Programmed_frameshift	Protein Metabolism	
Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)	peg.3536	General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)|HtrA_and_Sec_secretion	Protein Metabolism	
Ribosomal subunit interface protein	peg.3537	Ribosome_activity_modulation	Protein Metabolism	
flagellar protein	peg.3538|peg.3550			
Flagellar biosynthesis protein fliS	peg.3539	Flagellum	Motility and Chemotaxis	
Flagellar hook-associated protein fliD	peg.3540	Flagellum	Motility and Chemotaxis	
CDS_ID OB2502	peg.3541			
Flagellin protein FlaA	peg.3542	Flagellum	Motility and Chemotaxis	
Carbon storage regulator homolog	peg.3543			
Transmembrane protein	peg.3544			
Flagellar hook-associated protein flgL	peg.3546	Flagellum	Motility and Chemotaxis	
Flagellar hook-associated protein flgK	peg.3547	Flagellum	Motility and Chemotaxis	
CDS_ID OB2508	peg.3548			
Negative regulator of flagellin synthesis	peg.3549	Flagellum	Motility and Chemotaxis	
ComF operon protein C	peg.3551	Gram_Positive_Competence|Late_competence|gram_plus_late_competence	DNA Metabolism	
late competence gene	peg.3552			
"ComF operon protein A, DNA transporter ATPase"	peg.3553	Gram_Positive_Competence|Late_competence|gram_plus_late_competence	DNA Metabolism	
essential for degradative enzyme (sacB and degQ) expression and competence regulation (positive regulation of comK expression)	peg.3555			
degradative enzyme and competence regulation	peg.3556			
hypothetical conserved protein COG1739	peg.3557			
"Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 (as in PMID19099556)"	peg.3558|peg.3571|peg.3591			rxn10318|rxn10322|rxn10316|rxn10324|rxn10320|rxn10319|rxn10317|rxn10321|rxn10323
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	peg.3559	Methicillin_resistance_in_Staphylococci|Teichoic_and_lipoteichoic_acids_biosynthesis|Teichuronic_acid_biosynthesis	Virulence|Cell Wall and Capsule	rxn10307|rxn10308|rxn10311|rxn10312|rxn10310|rxn10314|rxn10315|rxn10309|rxn08040|rxn10313
Putative teichuronic acid biosynthesis glycosyl transferase TuaH	peg.3560	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	rxn09996
Putative N-acetylgalactosaminyl-diphosphoundecaprenol glucuronosyltransferase	peg.3561	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	rxn09996
Teichuronic acid biosynthesis protein TuaF	peg.3562	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	rxn09996
"Teichuronic acid biosynthesis protein TuaE, putative secreted polysaccharide polymerase"	peg.3563	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	rxn09996
Putative teichuronic acid biosynthesis glycosyl transferase TuaC	peg.3565	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	rxn09996
Teichuronic acid biosynthesis protein TuaB	peg.3566	Teichuronic_acid_biosynthesis	Cell Wall and Capsule	rxn09996
Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase	peg.3567			rxn09996
teichuronic acid biosynthesis glycosyltransferase TuaA	peg.3567			rxn09996
N-acetylmuramoyl-L-alanine amidase (major autolysin) (CWBP49)	peg.3568			rxn02875
modifier protein of major autolysin LytC (CWBP76)	peg.3569			
involved in the secretion of major autolysin LytC (amidase)	peg.3570			
UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)	peg.3572	CMP-N-acetylneuraminate_Biosynthesis|Sialic_Acid_Metabolism|Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule|Virulence	rxn00292|rxn00297
Minor teichoic acid biosynthesis protein GgaB	peg.3574	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	rxn10197
Minor teichoic acid biosynthesis protein GgaA	peg.3575	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	rxn10197
Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)	peg.3577	Rhamnose_containing_glycans|Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	rxn10195|rxn10194|rxn10196
Teichoic acid translocation permease protein TagG	peg.3578	Rhamnose_containing_glycans|Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	rxn10195|rxn10194|rxn10196
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12)	peg.3579	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	rxn10295|rxn10293|rxn10297|rxn10292|rxn10296|rxn10290|rxn10291|rxn10294|rxn10192|rxn10289
Poly(glycerol-phosphate) alpha-glucosyltransferase (EC 2.4.1.52)	peg.3580	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	rxn10304|rxn10193|rxn10299|rxn10300|rxn10302|rxn10305|rxn10298|rxn10301|rxn10306|rxn10303
Glycerol-3-phosphate cytidylyltransferase (EC 2.7.7.39)	peg.3581	Rhamnose_containing_glycans|Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	rxn00621
N-acetylmannosaminyltransferase (EC 2.4.1.187)	peg.3582	Teichoic_and_lipoteichoic_acids_biosynthesis|Vibrio_Polysaccharide_(VPS)_Biosynthesis	Cell Wall and Capsule|Virulence	rxn03852
"CDP-glycerol: N-acetyl-beta-D-mannosaminyl-1,4-N-acetyl-D-glucosaminyldiphosphoundecaprenyl glycerophosphotransferase"	peg.3583	Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule	rxn10192
Putative major teichoic acid biosynthesis protein C	peg.3584	Staphylococcal_phi-Mu50B-like_prophages|Teichoic_and_lipoteichoic_acids_biosynthesis	Virulence|Cell Wall and Capsule	
hydrolyses bond between the N-acetylglucosaminyl and the N-acetylmuramyl residues in the glycan chain	peg.3585			rxn02495
"Spore germination protein GerBA, germination response to combination of glucose, fructose, L-asparagine, and K+ (earliest stage)"	peg.3587			
"Spore germination protein GerBB, germination response to combination of glucose, fructose, L-asparagine, and K+ (earliest stage)"	peg.3588			
"Spore germination protein GerBC, germination response to combination of glucose, fructose, L-asparagine, and K+ (earliest stage)"	peg.3589			
Sugar symporter	peg.3590			
"Gamma-DL-glutamyl hydrolase PgsS (EC 3.4.19.-), catalyzes PGA release"	peg.3593	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	
Poly-gamma-glutamate synthase subunit PgsE/CapE (EC 6.3.2.-)	peg.3594	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	
Poly-gamma-glutamate synthase subunit PgsA/CapA (EC 6.3.2.-)	peg.3595	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	
Poly-gamma-glutamate synthase subunit PgsC/CapC (EC 6.3.2.-)	peg.3596	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	
Poly-gamma-glutamate synthase subunit PgsB/CapB (EC 6.3.2.-)	peg.3597	Poly-gamma-glutamate_biosynthesis	Amino Acids and Derivatives	
Ribose operon repressor	peg.3598	D-ribose_utilization	Carbohydrates	
Ribokinase (EC 2.7.1.15)	peg.3599	D-ribose_utilization|Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	rxn00772|rxn01987
"Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)"	peg.3600	D-ribose_utilization	Carbohydrates	rxn05549|rxn05644|rxn05160
"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)"	peg.3601	D-ribose_utilization	Carbohydrates	rxn05549|rxn05644|rxn05160
"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)"	peg.3602	D-ribose_utilization	Carbohydrates	rxn05549|rxn05644|rxn05160
"Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)"	peg.3603	D-ribose_utilization	Carbohydrates	rxn05549|rxn05644|rxn05160
Alpha-acetolactate decarboxylase (EC 4.1.1.5)	peg.3607	"Acetoin,_butanediol_metabolism|Alpha-acetolactate_operon|Murein_hydrolase_regulation_and_cell_death"	Carbohydrates|Cell Division and Cell Cycle	rxn02113
"Acetolactate synthase, catabolic (EC 2.2.1.6)"	peg.3608	"Acetoin,_butanediol_metabolism|Alpha-acetolactate_operon|Murein_hydrolase_regulation_and_cell_death"	Carbohydrates|Cell Division and Cell Cycle	rxn00011|rxn02185
Transcriptional regulator of alpha-acetolactate operon alsR	peg.3609			
Arsenical pump membrane protein	peg.3610			rxn05507|rxn05506
Spore coat protein B	peg.3612	Bsub-Spore-Coat	Cell Wall and Capsule	
Inner spore coat protein H	peg.3613	Bsub-Spore-Coat	Cell Wall and Capsule	
Spore coat protein G	peg.3614	Bsub-Spore-Coat	Cell Wall and Capsule	
Nitrilotriacetate monooxygenase component B (EC 1.14.13.-)	peg.3615			
Chromate transport protein	peg.3619|peg.3620			rxn05526
Trp repressor binding protein	peg.3622			
Endonuclease V (EC 3.1.21.7)	peg.3624	"DNA_repair,_bacterial"	DNA Metabolism	
Manganese-dependent protein-tyrosine phosphatase (EC 3.1.3.48)	peg.3631	Exopolysaccharide_Biosynthesis	Cell Wall and Capsule	
Tyrosine-protein kinase EpsD (EC 2.7.10.2)	peg.3632	Exopolysaccharide_Biosynthesis|Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	
Tyrosine-protein kinase transmembrane modulator EpsC	peg.3633	Exopolysaccharide_Biosynthesis|Extracellular_Polysaccharide_Biosynthesis_of_Streptococci	Cell Wall and Capsule	
"Helicase, SNF2/RAD54 family"	peg.3635			
transcriptional regulator (DeoR family)	peg.3637			
Single-stranded DNA-binding protein	peg.3638|peg.4096	"DNA_repair,_bacterial|DNA_repair,_bacterial_RecFOR_pathway|pVir_Plasmid_of_Campylobacter"	DNA Metabolism|Virulence	rxn05294
"Sortase A, LPXTG specific"	peg.3641			
Large-conductance mechanosensitive channel	peg.3643			
(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase (EC 4.2.1.-)	peg.3644	Fatty_Acid_Biosynthesis_FASII	Fatty Acids and Lipids	rxn05398|rxn05333|rxn05330|rxn05415|rxn05419|rxn05402|rxn05335|rxn05369|rxn05381|rxn05386|rxn05361|rxn05334|rxn05394|rxn05406|rxn05365|rxn05332|rxn05329|rxn05427|rxn05390|rxn05423|rxn05462|rxn05411|rxn05431|rxn05373|rxn05331|rxn05377
Flagellar basal-body rod protein flgF	peg.3647	Flagellum	Motility and Chemotaxis	
MreB-like protein (Mbl protein)	peg.3648	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Stage III sporulation protein D	peg.3649			
required for translation of spoIIID	peg.3650			
Pectin lyase like protein	peg.3653			
Cytosine/purine/uracil/thiamine/allantoin permease family protein	peg.3654			rxn05316|rxn05204|rxn05527|rxn09657|rxn05197|rxn05317|rxn05680|rxn05318|rxn05203|rxn05682
putative efflux protein	peg.3655			
Nicotinamidase/isochorismatase family protein	peg.3656	NAD_and_NADP_cofactor_biosynthesis_global	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Ammonium transporter	peg.3658			rxn05466
Nitrogen regulatory protein P-II	peg.3659			
Bacitracin transport permease protein BCRC	peg.3660			
Stage II sporulation protein related to metaloproteases (SpoIIQ)	peg.3662			
Phosphinothricin N-acetyltransferase (EC 2.3.1.-)	peg.3663			
Cardiolipin synthetase (EC 2.7.8.-)	peg.3666|peg.3731	Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria	Fatty Acids and Lipids	rxn10342|rxn10340|rxn10339|rxn10334|rxn10337|rxn10338|rxn10341|rxn10336|rxn10335
positive regulation of multidrug-efflux transporter genes (bmr and blt)	peg.3667			
Rrf2-linked NADH-flavin reductase	peg.3669			
"Rrf2 family transcriptional regulator, group III"	peg.3670	Rrf2_family_transcriptional_regulators	RNA Metabolism	
Urease alpha subunit (EC 3.5.1.5)	peg.3671	Transport_of_Nickel_and_Cobalt|Urea_decomposition	Membrane Transport|Amino Acids and Derivatives	rxn00101
Urease beta subunit (EC 3.5.1.5)	peg.3672	Urea_decomposition	Amino Acids and Derivatives	rxn00101
Urease gamma subunit (EC 3.5.1.5)	peg.3673	Urea_decomposition	Amino Acids and Derivatives	rxn00101
dephosphorylates Spo0F-P	peg.3676			
Molybdenum cofactor biosynthesis protein A	peg.3677	Molybdopterin_biosynthesis|YgfZ	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	
Formate dehydrogenase chain D (EC 1.2.1.2)	peg.3678			rxn00371
D-amino acid dehydrogenase large subunit (EC 1.4.99.1)	peg.3680|peg.3681	Respiratory_dehydrogenases_1	Respiration	
Stage II sporulation protein D (SpoIID)	peg.3682			
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	peg.3683|peg.3717			rxn00461
ATP synthase epsilon chain (EC 3.6.3.14)	peg.3687	F0F1-type_ATP_synthase	Respiration	rxn10042
ATP synthase beta chain (EC 3.6.3.14)	peg.3688	F0F1-type_ATP_synthase	Respiration	rxn10042
ATP synthase gamma chain (EC 3.6.3.14)	peg.3689	F0F1-type_ATP_synthase	Respiration	rxn10042
ATP synthase alpha chain (EC 3.6.3.14)	peg.3690	F0F1-type_ATP_synthase	Respiration	rxn10042
ATP synthase delta chain (EC 3.6.3.14)	peg.3691	F0F1-type_ATP_synthase	Respiration	rxn10042
ATP synthase B chain (EC 3.6.3.14)	peg.3692	F0F1-type_ATP_synthase	Respiration	rxn10042
ATP synthase C chain (EC 3.6.3.14)	peg.3693	F0F1-type_ATP_synthase	Respiration	rxn10042
ATP synthase A chain (EC 3.6.3.14)	peg.3694	F0F1-type_ATP_synthase	Respiration	rxn10042
ATP synthase protein I	peg.3695	F0F1-type_ATP_synthase	Respiration	rxn10042
phosphoribosyltransferase	peg.3696			rxn00711
Serine hydroxymethyltransferase (EC 2.1.2.1)	peg.3697	5-FCL-like_protein|Folate_Biosynthesis|Glycine_Biosynthesis|Glycine_and_Serine_Utilization|Glycine_cleavage_system|Photorespiration_(oxidative_C2_cycle)|Serine-glyoxylate_cycle|Serine_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Amino Acids and Derivatives|Carbohydrates"	rxn00692
Ribose 5-phosphate isomerase B (EC 5.3.1.6)	peg.3699	Calvin-Benson_cycle|D-ribose_utilization|Dihydroxyacetone_kinases|Pentose_phosphate_pathway	Carbohydrates	rxn00777
Hypothetical transmembrane protein ywlD	peg.3701			
Sua5 YciO YrdC YwlC family protein	peg.3702	YrdC-YciO|tRNA_modification_Archaea|tRNA_modification_Archaea_Henri|tRNA_modification_Bacteria|tRNA_modification_yeast_cytoplasmic|tRNA_modification_yeast_mitochondrial	RNA Metabolism	
Stage II sporulation protein required for processing of pro-sigma-E (SpoIIR)	peg.3704			
Methylase of polypeptide chain release factors	peg.3707			
Peptide chain release factor 1	peg.3708	Translation_factors_bacterial	Protein Metabolism	
Malate permease	peg.3711	"Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP"	Carbohydrates	rxn05603|rxn05605
Thymidine kinase (EC 2.7.1.21)	peg.3713	Folate_Biosynthesis|pyrimidine_conversions	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Nucleosides and Nucleotides"	rxn01518|rxn01143
Transcription termination factor Rho	peg.3715	Transcription_factors_bacterial	RNA Metabolism	
"Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)"	peg.3716	"Calvin-Benson_cycle|Glycolysis_and_Gluconeogenesis|Glycolysis_and_Gluconeogenesis,_including_Archaeal_enzymes"	Carbohydrates	rxn00549
Transaldolase (EC 2.2.1.2)	peg.3718	Folate_Biosynthesis|Pentose_phosphate_pathway	"Cofactors, Vitamins, Prosthetic Groups, Pigments|Carbohydrates"	rxn01333
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	peg.3719	Calvin-Benson_cycle|Formaldehyde_assimilation:_Ribulose_monophosphate_pathway|Glycolysis_and_Gluconeogenesis|Hexitol_degradation	Carbohydrates	rxn01870|rxn00786|rxn01334
Sporulation initiation phosphotransferase (Spo0F)	peg.3720			
CTP synthase (EC 6.3.4.2)	peg.3722	pyrimidine_conversions	Nucleosides and Nucleotides	rxn00410|rxn00412
DNA-directed RNA polymerase delta subunit (EC 2.7.7.6)	peg.3723	RNA_polymerase_bacterial	RNA Metabolism	
Fe-S oxidoreductase	peg.3725			
Uncharacterized protein ywjE	peg.3726			
"UV-endonuclease, putative"	peg.3727			
Bifunctional deaminase-reductase domain protein	peg.3729|peg.4082			
Uncharacterized ABC transporter ATP-binding protein ywjA	peg.3730			
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)	peg.3732			rxn05748
Respiratory nitrate reductase delta chain (EC 1.7.99.4)	peg.3733			rxn05748
Respiratory nitrate reductase beta chain (EC 1.7.99.4)	peg.3734			rxn05748
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	peg.3735			rxn05748
"regulation of anaerobic genes (narK, narGHJI)"	peg.3738			
Arginyl-tRNA synthetase (EC 6.1.1.19)	peg.3740	tRNA_aminoacylation	Protein Metabolism	rxn05296
DUF1934 domain-containing protein	peg.3741			
subtilosin A	peg.3742			
Antilisterial bacteriocin subtilosin biosynthesis protein albA	peg.3743			
ZINC PROTEASE (EC 3.4.99.-)	peg.3748			
surface antigen gene	peg.3750|peg.3751			
regulator of the activity of phosphatase RapF	peg.3753			
EBSC protein	peg.3754			
Agmatinase (EC 3.5.3.11)	peg.3755	Arginine_and_Ornithine_Degradation|Polyamine_Metabolism	Amino Acids and Derivatives	rxn00858
Spermidine synthase (EC 2.5.1.16)	peg.3756	Polyamine_Metabolism	Amino Acids and Derivatives	rxn01406|rxn02061
Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-)	peg.3757			
4-oxalocrotonate tautomerase (EC 5.3.2.-)	peg.3760	Central_meta-cleavage_pathway_of_aromatic_compound_degradation	Metabolism of Aromatic Compounds	rxn03690
methylenomycin A resistance protein	peg.3763			
Rrf2 family transcriptional regulator	peg.3764	Motility_of_Campylobacter|Rrf2_family_transcriptional_regulators	Motility and Chemotaxis|RNA Metabolism	
LysR family transcriptional regulator YeiE	peg.3771			
Phosphate acetyltransferase (EC 2.3.1.8)	peg.3772	"Acetyl-CoA_pathway_of_CO2_fixation|Ethanolamine_utilization|Fermentations:_Lactate|Fermentations:_Mixed_acid|MLST|Propanediol_utilization|Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate|Threonine_anaerobic_catabolism_gene_cluster"	Carbohydrates|Virulence|Amino Acids and Derivatives	rxn00173|rxn00670
Vng2021c	peg.3773			
Bacilysin biosynthesis oxidoreductase ywfH (EC 1.-.-.-)	peg.3774			
Bacilysin exporter protein BacE	peg.3776	Bacilysin_biosynthesis	Amino Acids and Derivatives	
Alanine-anticapsin ligase BacD	peg.3777	Bacilysin_biosynthesis	Amino Acids and Derivatives	
Bacilysin biosynthesis oxidoreductase BacC	peg.3778	Bacilysin_biosynthesis	Amino Acids and Derivatives	
Bacilysin biosynthesis protein BacB	peg.3779	Bacilysin_biosynthesis	Amino Acids and Derivatives	
Bacilysin biosynthesis protein BacA	peg.3780	Bacilysin_biosynthesis	Amino Acids and Derivatives	
MFS transporter	peg.3781|peg.4072			
Arginine permease RocE	peg.3782|peg.4039	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	rxn05303
involved in arginine and ornithine utilization	peg.3783			
spore coat polysaccharide synthesis	peg.3787|peg.3791|peg.3793|peg.3795|peg.3796			
"dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)"	peg.3788	Rhamnose_containing_glycans|dTDP-rhamnose_synthesis|linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	rxn01997
Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	peg.3789	Rhamnose_containing_glycans|dTDP-rhamnose_synthesis|linker_unit-arabinogalactan_synthesis	Cell Wall and Capsule	rxn01675
N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43)	peg.3790	CMP-N-acetylneuraminate_Biosynthesis|Sialic_Acid_Metabolism	Cell Wall and Capsule	rxn00827
N-acetylneuraminate synthase (EC 2.5.1.56)	peg.3792	CMP-N-acetylneuraminate_Biosynthesis|Sialic_Acid_Metabolism	Cell Wall and Capsule	rxn01316
"Putative aminotransferase, DegT family"	peg.3794			
alternate gene name: ipa-62r	peg.3797			
COG2363	peg.3798			
alternate gene name: ipa-59d	peg.3800			
Uracil-DNA glycosylase (EC 3.2.2.-)	peg.3802	DNA_Repair_Base_Excision	DNA Metabolism	
probable glycosyl transferase	peg.3803			
alternate gene name: ipa-55d	peg.3804			
alternate gene name: ipa-54d	peg.3805			
alternate gene name: ipa-53r	peg.3806			
alternate gene name: ipa-51d	peg.3808			
Sucrose-6-phosphate hydrolase (EC 3.2.1.26)	peg.3809	Fructooligosaccharides(FOS)_and_Raffinose_Utilization|Sucrose-specific_PTS|Sucrose_Metabolism|Sucrose_utilization	Carbohydrates|Membrane Transport	rxn01737|rxn02760
"PTS system, sucrose-specific IIB component (EC 2.7.1.69)"	peg.3810	Sucrose_utilization	Carbohydrates	rxn05655
"PTS system, sucrose-specific IIC component (EC 2.7.1.69)"	peg.3810	Sucrose_utilization	Carbohydrates	rxn05655
Formate/nitrite family of transporters	peg.3811			rxn05559|rxn05625
SacPA operon antiterminator	peg.3812			
alternate gene name: ipa-46d	peg.3813			
extracellular serine protease	peg.3814|peg.3845			
NADPH-linked nitro/flavin reductase [EC:1.-.-.-]	peg.3816			rxn03975|rxn03976
Uncharacterized membrane protein ywcF	peg.3817			
alternate gene name: ipa-41r	peg.3818			
AA3-600 quinol oxidase subunit IV	peg.3819	Cytochrome_c_oxidases_d@O_copy|Terminal_AA3-600_quinol_oxidase|Terminal_cytochrome_oxidases	Respiration	rxn10046
AA3-600 quinol oxidase subunit IIII	peg.3820	Cytochrome_c_oxidases_d@O_copy|Terminal_AA3-600_quinol_oxidase|Terminal_cytochrome_oxidases	Respiration	rxn10046
AA3-600 quinol oxidase subunit I	peg.3821	Cytochrome_c_oxidases_d@O_copy|Terminal_AA3-600_quinol_oxidase|Terminal_cytochrome_oxidases	Respiration	rxn10046
AA3-600 quinol oxidase subunit II	peg.3822	Cytochrome_c_oxidases_d@O_copy|Terminal_AA3-600_quinol_oxidase|Terminal_cytochrome_oxidases	Respiration	rxn10046
YWZA protein	peg.3823			
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)	peg.3824	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	rxn00355
Galactokinase (EC 2.7.1.6)	peg.3825	Lactose_and_Galactose_Uptake_and_Utilization	Carbohydrates	rxn00808
alternate gene name: ipa-34d	peg.3826			
alternate gene name: ipa-33d	peg.3827			
alternate gene name: ipa-32r	peg.3828			
Putative symporter yjcG	peg.3829			rxn05308
alternate gene name: ipa-30d	peg.3830			
Ferrous iron transport peroxidase EfeB	peg.3831			rxn05292
Ferrous iron transport periplasmic protein EfeO	peg.3832			rxn05292
Hydroxyethylthiazole kinase (EC 2.7.1.50)	peg.3835	Thiamin_biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn03075
LysR family regulatory protein CidR	peg.3836	Murein_hydrolase_regulation_and_cell_death	Cell Division and Cell Cycle	
Holin-like protein CidA	peg.3837	Murein_hydrolase_regulation_and_cell_death	Cell Division and Cell Cycle	
CidA-associated membrane protein CidB	peg.3838	Murein_hydrolase_regulation_and_cell_death	Cell Division and Cell Cycle	
Permeases of the major facilitator superfamily	peg.3839|peg.4090			
alternate gene name: ipa-20r	peg.3840			
LSU m5C1962 methyltransferase RlmI	peg.3841	Ribosome_biogenesis_bacterial|tRNA_modification_Bacteria	Protein Metabolism|RNA Metabolism	
alternate gene name: ipa-17d	peg.3843			
Negative regulatory protein of antiterminator SacY	peg.3846			
"PTS system, sucrose-specific IIB component (EC 2.7.1.69), but not"	peg.3846			
"PTS system, sucrose-specific IIC component (EC 2.7.1.69), but not"	peg.3846			
Levansucrase and sucrase synthesis operon antiterminator	peg.3847			
alternate gene name: ipa-11d	peg.3849			
Putative HTH-type transcriptional regulator ywaE	peg.3850			
"Aminopeptidase Y (Arg, Lys, Leu preference) (EC 3.4.11.-)"	peg.3852	Protein_degradation	Protein Metabolism	
"1,4-dihydroxy-2-naphthoate octaprenyltransferase (EC 2.5.1.-)"	peg.3854	Menaquinone_and_Phylloquinone_Biosynthesis	"Cofactors, Vitamins, Prosthetic Groups, Pigments"	rxn05267
D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)	peg.3855	D-Alanyl_Lipoteichoic_Acid_Biosynthesis|Methicillin_resistance_in_Staphylococci|Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule|Virulence	rxn10191
D-alanyl transfer protein DltB	peg.3856	D-Alanyl_Lipoteichoic_Acid_Biosynthesis|Methicillin_resistance_in_Staphylococci|Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule|Virulence	rxn10191
D-alanine--poly(phosphoribitol) ligase subunit 2 (EC 6.1.1.13)	peg.3857	D-Alanyl_Lipoteichoic_Acid_Biosynthesis|Methicillin_resistance_in_Staphylococci|Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule|Virulence	rxn10191
Poly(glycerophosphate chain) D-alanine transfer protein DltD	peg.3858	D-Alanyl_Lipoteichoic_Acid_Biosynthesis|Methicillin_resistance_in_Staphylococci|Teichoic_and_lipoteichoic_acids_biosynthesis	Cell Wall and Capsule|Virulence	rxn10191
Short-chain dehydrodenase (gene dltE)	peg.3859			
"PTS system, lichenan-, cellobiose-specific IIB component (EC 2.7.1.69)"	peg.3864			rxn05518
"Transcriptional antiterminator of lichenan operon, BglG family"	peg.3865	Beta-Glucoside_Metabolism	Carbohydrates	
Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)	peg.3867			
RNA polymerase sigma factor SigY	peg.3875			
Purine-cytosine permease	peg.3876			rxn05316|rxn05204|rxn05527|rxn05317|rxn05680|rxn05318|rxn05203
"YjeF protein, C-terminal domain"	peg.3877			
Transport ATP-binding protein CydD	peg.3878	Cytochrome_c_oxidases_d@O_copy|Terminal_cytochrome_d_ubiquinol_oxidases|Terminal_cytochrome_oxidases	Respiration	
Transport ATP-binding protein CydC	peg.3879	Cytochrome_c_oxidases_d@O_copy|Terminal_cytochrome_d_ubiquinol_oxidases|Terminal_cytochrome_oxidases	Respiration	
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	peg.3880	Cytochrome_c_oxidases_d@O_copy|Terminal_cytochrome_d_ubiquinol_oxidases|Terminal_cytochrome_oxidases	Respiration	rxn10045
L-Malate Citrate symporter (TC 2.A.24.2.4)	peg.3882			rxn05211|rxn05605
Polysaccharide deacetylase	peg.3885	Vibrio_Core_Oligosaccharide_Biosynthesis	Cell Wall and Capsule	
Leucine-rich protein	peg.3887			
UDP-glucose 4-epimerase (EC 5.1.3.2)	peg.3891	Lactose_and_Galactose_Uptake_and_Utilization|N-linked_Glycosylation_in_Bacteria|Rhamnose_containing_glycans|linker_unit-arabinogalactan_synthesis	Carbohydrates|Virulence|Cell Wall and Capsule	rxn00214|rxn00295
Phospholipid-binding protein	peg.3892			
putative two-component system response regulator	peg.3896			
Tripeptide aminopeptidase (EC 3.4.11.4)	peg.3897			rxn00350
Methionine synthase II (cobalamin-independent)	peg.3900|peg.3901			rxn00693
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)	peg.3902			rxn00992
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9)	peg.3903			rxn00290|rxn00994
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9)	peg.3904			rxn00290|rxn00994
D-beta-hydroxybutyrate permease	peg.3905			
Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51)	peg.3906	rRNA_modification_Bacteria	RNA Metabolism	
Nucleoside permease nupC	peg.3907			rxn05198|rxn05199|rxn05200|rxn05205
Ca(2+) Citrate symporter (TC 2.A.11.1.2)	peg.3911	"Citrate_Metabolism,_Transport,_and_Regulation"	Carbohydrates	rxn05213
"Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73)"	peg.3912	Beta-Glucoside_Metabolism	Carbohydrates	
"Beta-glucoside bgl operon antiterminator, BglG family"	peg.3913	Beta-Glucoside_Metabolism	Carbohydrates	
MDR-type permease	peg.3915			
ATP-dependent RNA helicase Bsu3907	peg.3916	"ATP-dependent_RNA_helicases,_bacterial"	RNA Metabolism	
"cell wall-associated protein precursor (CWBP200, 105, 62)"	peg.3928			
Universal stress protein UspA and related nucleotide-binding proteins	peg.3930			
"PTS system, beta-glucoside-specific IIA component (EC 2.7.1.69)"	peg.3932	Beta-Glucoside_Metabolism	Carbohydrates	rxn05647|rxn05501
"PTS system, beta-glucoside-specific IIB component (EC 2.7.1.69)"	peg.3932	Beta-Glucoside_Metabolism	Carbohydrates	rxn05647|rxn05501
"PTS system, beta-glucoside-specific IIC component (EC 2.7.1.69)"	peg.3932	Beta-Glucoside_Metabolism	Carbohydrates	rxn05647|rxn05501
Hut operon positive regulatory protein	peg.3939	Histidine_Degradation	Amino Acids and Derivatives	
Histidine ammonia-lyase (EC 4.3.1.3)	peg.3940	Histidine_Degradation	Amino Acids and Derivatives	rxn00867
Urocanate hydratase (EC 4.2.1.49)	peg.3941	Histidine_Degradation	Amino Acids and Derivatives	rxn02085
Imidazolonepropionase (EC 3.5.2.7)	peg.3942	Histidine_Degradation	Amino Acids and Derivatives	rxn01642
Formiminoglutamase (EC 3.5.3.8)	peg.3943	Histidine_Degradation	Amino Acids and Derivatives	rxn01639
Histidine transport protein (permease)	peg.3944	Histidine_Degradation	Amino Acids and Derivatives	rxn05299
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)	peg.3945	Deoxyribose_and_Deoxynucleoside_Catabolism|pyrimidine_conversions	Carbohydrates|Nucleosides and Nucleotides	rxn01648|rxn01366
Deoxyribose-phosphate aldolase (EC 4.1.2.4)	peg.3947	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	rxn00784
Deoxyribonucleoside regulator DeoR (transcriptional repressor)	peg.3948	Deoxyribose_and_Deoxynucleoside_Catabolism	Carbohydrates	
Ethanolamine permease	peg.3950	Ethanolamine_utilization	Carbohydrates	rxn05551
MmgE/PrpD family protein	peg.3951			
"amino acid ABC transporter, ATP-binding protein"	peg.3953			rxn05237|rxn05304
"Cysteine ABC transporter, substrate-binding protein"	peg.3955			rxn05237|rxn05304
Choloylglycine hydrolase (EC 3.5.1.24)	peg.3959			rxn04068|rxn03094|rxn02795
Ferrichrome-binding protein	peg.3966			
DUF1093 domain-containing protein	peg.3967			
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29)	peg.3972	Inositol_catabolism	Carbohydrates	rxn01176
Inosose isomerase (EC 5.3.99.-)	peg.3973			
Glyceraldehyde-3-phosphate ketol-isomerase (EC 5.3.1.1)	peg.3974	Inositol_catabolism	Carbohydrates	rxn00747
Myo-inositol 2-dehydrogenase (EC 1.1.1.18)	peg.3975	Inositol_catabolism	Carbohydrates	rxn00879
Minor myo-inositol transporter IolF	peg.3976|peg.3986	Inositol_catabolism	Carbohydrates	rxn05593
Inosose dehydratase (EC 4.2.1.44)	peg.3977	Inositol_catabolism	Carbohydrates	rxn02007
Epi-inositol hydrolase	peg.3978	Inositol_catabolism	Carbohydrates	rxn03931
5-keto-2-deoxygluconokinase (EC 2.7.1.92)	peg.3979	Inositol_catabolism	Carbohydrates	rxn03932
5-keto-2-deoxygluconokinase B (EC 2.7.1.92)	peg.3980	Inositol_catabolism	Carbohydrates	rxn03932
Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)	peg.3981	Inositol_catabolism	Carbohydrates	rxn00671|rxn00501|rxn09944
"Transcriptional repressor of the myo-inositol catabolism operon, DeoR family"	peg.3982	Inositol_catabolism	Carbohydrates	
Oxidoreductase ion channel	peg.3983			
Chaperone protein HtpG	peg.3987	Protein_chaperones	Protein Metabolism	
alternate gene name: yxaT	peg.3990			
alternate gene name: yxaQ	peg.3993			
SAM-dependent methyltransferase (EC 2.1.1.-)	peg.3994			
alternate gene name: yxaO	peg.3995			
cell surface protein	peg.3999			
Serine/threonine protein kinase	peg.4002			
"Quercetin 2,3-dioxygenase (EC 1.13.11.24)"	peg.4004			rxn01555
"Oxidoreductase, short-chain dehydrogenase/reductase family"	peg.4006			
putative MarR-family transcriptional regulator	peg.4007			
Holin associated membrane protein 2	peg.4008	Murein_hydrolase_regulation_and_cell_death	Cell Division and Cell Cycle	
Holin-like protein 2	peg.4008	Murein_hydrolase_regulation_and_cell_death	Cell Division and Cell Cycle	
Glycerate kinase (EC 2.7.1.31)	peg.4010	"D-galactarate,_D-glucarate_and_D-glycerate_catabolism|Glycerate_metabolism|Glycerolipid_and_Glycerophospholipid_Metabolism_in_Bacteria|Glycine_and_Serine_Utilization|Photorespiration_(oxidative_C2_cycle)|Serine-glyoxylate_cycle"	Carbohydrates|Fatty Acids and Lipids|Amino Acids and Derivatives	rxn01102
Gluconate operon transcriptional repressor	peg.4011	D-gluconate_and_ketogluconates_metabolism	Carbohydrates	
Gluconokinase (EC 2.7.1.12)	peg.4012	D-gluconate_and_ketogluconates_metabolism|Entner-Doudoroff_Pathway	Carbohydrates	rxn01275
Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	peg.4015			
Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)	peg.4016			
Dipeptide transport ATP-binding protein dppD	peg.4021			
"Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)"	peg.4025	Calvin-Benson_cycle|Glycolysis_and_Gluconeogenesis	Carbohydrates	rxn00549
LSU m3Psi1915 methyltransferase RlmH	peg.4029	Iojap|NAD_and_NADP_cofactor_biosynthesis_global|Ribosome_biogenesis_bacterial|rRNA_modification_Bacteria|tRNA_modification_Bacteria	"Protein Metabolism|Cofactors, Vitamins, Prosthetic Groups, Pigments|RNA Metabolism"	
Glutathione-dependent formaldehyde dehydrogenase	peg.4031			
YYCN protein	peg.4035			
regulator of the activity of phosphatase RapG	peg.4037			
Arginase (EC 3.5.3.1)	peg.4038	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	rxn00394
Ornithine aminotransferase (EC 2.6.1.13)	peg.4040	"Arginine_and_Ornithine_Degradation|Proline,_4-hydroxyproline_uptake_and_utilization"	Amino Acids and Derivatives	rxn00467
Arginine utilization regulatory protein RocR	peg.4041	Arginine_and_Ornithine_Degradation	Amino Acids and Derivatives	
Zn-dependent hydrolase (beta-lactamase superfamily)	peg.4043	"Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"	Virulence	
SA_27: YycH protein	peg.4045			
Two-component sensor kinase SA14-24	peg.4046	"Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"	Virulence	rxn05295
Two-component response regulator SA14-24	peg.4047	"Heme,_hemin_uptake_and_utilization_systems_in_GramPositives"	Virulence	rxn05295
Adenylosuccinate synthetase (EC 6.3.4.4)	peg.4048	Histidine_Biosynthesis|Purine_conversions	Amino Acids and Derivatives|Nucleosides and Nucleotides	rxn00838
prolyl endopeptidase	peg.4049			
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]	peg.4050	DNA-replication	DNA Metabolism	rxn05294
Cyanate MFS transporter	peg.4054			
LSU ribosomal protein L9p	peg.4056	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
"Phosphoesterase, DHH family protein"	peg.4057			
Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1)	peg.4061			rxn00001
Probable glucarate transporter	peg.4063			
Type-II membrane binding region	peg.4066			
Conserved protein	peg.4069			
oxetanocin A resistance protein	peg.4071			
"Streptothricin acetyltransferase, Streptomyces lavendulae type"	peg.4080	Streptothricin_resistance	Virulence	
Similar to tetracycline resistance protein	peg.4083			
tetracycline resistance leader peptide	peg.4084			
Maltose O-acetyltransferase (EC 2.3.1.79)	peg.4091	Maltose_and_Maltodextrin_Utilization	Carbohydrates	rxn01133
Possible glyoxylase family protein (Lactoylglutathione lyase) (EC 4.4.1.5)	peg.4092			rxn01834
Exodeoxyribonuclease III (EC 3.1.11.2)	peg.4094	"DNA_repair,_bacterial"	DNA Metabolism	
SSU ribosomal protein S18p	peg.4095	Ribosome_SSU_bacterial|Staphylococcal_pathogenicity_islands_SaPI	Protein Metabolism|Virulence	rxn05296
SSU ribosomal protein S6p	peg.4097	Ribosome_SSU_bacterial	Protein Metabolism	rxn05296
GTP-binding and nucleic acid-binding protein YchF	peg.4098	Universal_GTPases	Protein Metabolism	
"Spore protease GPR related protein, YYAC B.subtilis ortholog"	peg.4101			
Chromosome (plasmid) partitioning protein ParB	peg.4102	Bacterial_Cytoskeleton|Plasmid_replication|Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle|DNA Metabolism	
Stage 0 sporulation protein J	peg.4102	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Chromosome (plasmid) partitioning protein ParA	peg.4103	Bacterial_Cytoskeleton|Plasmid_replication|Two_cell_division_clusters_relating_to_chromosome_partitioning	Cell Division and Cell Cycle|DNA Metabolism	
Sporulation initiation inhibitor protein Soj	peg.4103	Bacterial_Cytoskeleton	Cell Division and Cell Cycle	
Protein yyaA	peg.4105			
Ribosomal RNA small subunit methyltransferase G (EC 2.1.1.-)	peg.4106	rRNA_modification_Bacteria	RNA Metabolism	
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	peg.4107	mnm5U34_biosynthesis_bacteria|tRNA_modification_Bacteria|tRNA_modification_yeast_mitochondrial	RNA Metabolism	
GTPase and tRNA-U34 5-formylation enzyme TrmE	peg.4108	Universal_GTPases|mnm5U34_biosynthesis_bacteria|tRNA_modification_Bacteria|tRNA_modification_yeast_mitochondrial	Protein Metabolism|RNA Metabolism	
Jag protein	peg.4109	tRNA_modification_Bacteria	RNA Metabolism	
Ribonuclease P protein component (EC 3.1.26.5)	peg.4111	General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)|tRNA_processing	Protein Metabolism|RNA Metabolism	rxn05295
LSU ribosomal protein L34p	peg.4112	Ribosome_LSU_bacterial	Protein Metabolism	rxn05296
